Bo Li's Home Page

I'm a third year graduate student in computer sciences department at UW-Madison.

My Office is MSC5765C.

My Email: bli[at]cs[dot]wisc[dot]edu

Education

• 2008.9 ~ present        Computer Sciences Department, University of Wisconsin-Madison
• 2004.9 ~ 2008.7         ACM Honor Class, Department of Computer Science and Engineering, Shanghai Jiao Tong University

Research

I'm a research assistant of Prof. Dewey.

Publication

• Li, B. and Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. Accepted.


• Chung, D., Kuan, P. F., Li, B., Sanalkumar, R., Liang, K., Bresnick, E., Dewey, C. N., Keles, S. (2011). Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-seq data. PLoS Computational Biology, 7:e1002111.


• Li, B., Ruotti, V., Stewart, R. M., Thomson, J. A., Dewey, C. N. (2010). RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics, 26(4), 493-500.

Miscellaneous