DONGJUN CHUNG

   Dongjun Chung      
Postdoctoral Associate
Department of Biostatistics
Yale University
New Haven, CT 06520

e-mail: dongjun_dot_chung_at_yale_dot_edu


RESEARCH INTEREST

- Computational Biology.
- Machine Learning.


SELECTED PUBLICATIONS

 Google Scholar, My Citations Page

Chung D, Park D, Myers K, Grass J, Kiley P, Landick R, and Keles S (2012),
“dPeak: High resolution identification of transcription factor binding sites
from PET and SET ChIP-Seq data.” (submitted)
Chung D and Kim H (2012), “Accurate ensemble pruning with PL-Bagging.” (submitted)
Myers K, Yan H, Ong I, Chung D, Liang K, Tran F, Keles S, Landick R, and Kiley T (2012),
“Genome-scale analysis of E. coli FNR reveals complex features of transcription factor binding,”
To appear in PLoS Genetics.
Kuan PF, Chung D, Pan G, Thomson JA, Stewart R, and Keles S (2011),
“A statistical framework for the analysis of ChIP-Seq data,”
Journal of the American Statistical Association, Vol. 106, pp. 891-903.

Chung D, Kuan PF, Li B, SanalKumar R, Liang K, Bresnick E, Dewey C, and Keles S (2011),
“Discovering transcription factor binding sites in highly repetitive regions of genomes
with multi-read analysis of ChIP-Seq data,” PLoS Computational Biology, 7(7): e1002111. [CrossRef]
- Highlighted in Nature Reviews Genetics.
Chung D and Keles S (2011), “eQTL mapping for functional classes of Saccharomyces cerevisiae genes
with multivariate sparse partial least squares regression,”
Lu HH, Scholkopf B, and Zhao H (Eds.), Handbook of Statistical Bioinformatics, Springer. [website]

Chung D and Keles S (2010), “Sparse partial least squares classification for high dimensional data,”
Statistical Applications in Genetics and Molecular Biology, Vol. 9, Article 17.
Durtschi RB, Chung D, Gentry LR, Chung MK, and Vorperian HK (2009),
“Developmental craniofacial anthropometry: Assessment of race effects,” Clinical Anatomy, Vol. 22, pp.800-808.

Chung D, Chung MK, Durtschi RB, Gentry LR, and Vorperian HK (2008),
“Measurement consistency from magnetic resonance images,” Academic Radiology, Vol. 15, pp.1322-1330.


SOFTWARES

MOSAiCS: MOdel-based one and two Sample Analysis and Inference for ChIP-Seq.
- Bioconductor 2.11 (Release) (BiocViews: mosaics, mosaicsExample)
- mosaics software Google group
- Available in Galaxy Tool Shed: check "mosaics" under "Sequence Analysis" or "Statistics"

CSEM: Multi-read allocation of ChIP-Seq data.
- Software page
- Available in Galaxy Tool Shed: check "csem" under "Next Gen Mappers"

SPLS: Sparse Partial Least Squares (SPLS) Regression and Classification.
- Software page
-CRAN


RECENT TALKS

ENAR Spring Meeting, Orlando, FL, March 2013.
Joint Statistical Meetings, San Diego, CA, July 2012.
ENAR Spring Meeting, Washington, DC, April 2012.
2011 ICSA Applied Statistics Symposium, New York, NY, June 2011.
ENAR Spring Meeting, Miami, FL, March 2011.
The Fourth Midwest Statistics Research Colloquium, Madison, WI, March 2011.

WORK EXPERIENCES

- Spring 2013 ~ : Postdoctoral Associate at professor Hongyu Zhao's group, Yale University
- Fall 2012 : Postdoctoral Associate for professor Sunduz Keles
- Fall 2008 ~ Spring 2012 : Research Assistant for professor Sunduz Keles
- Fall 2007 ~ Spring 2008 : Project Assistant, Vocal Tract Development Lab, Waisman Center
(Supervisor: Moo K. Chung and Houri K. Vorperian)


EDUCATION

 PhD, University of Wisconsin, Madison, WI, USA, 2012
MA, Yonsei University, Seoul, Republic of Korea, 2006
BA, Yonsei University, Seoul, Republic of Korea, 2004