- Aguerre, M. T. Hunt, B Larget, M. Wattiaux (accepted).
Effect of Dietary Crude Protein Ammonia-N emission measured by herd nitrogen mass balance in a freestall dairy barn managed under farm-like conditions.
Animal: An International Journal of Animal Bioscience.
- White, M.A., C. Ane, C.N. Dewey, B. Larget, and B.A. Payseur (2009).
Fine-Scale Phylogenetic Discordance across the House Mouse Genome.
PLOS Genetics 5: e729.
(pdf)
- Luo, R.and B. Larget (2009).
Modeling Substitution and Indel Processes for AFLP Marker Evolution and Phylogenetic Inference.
The Annals of Applied Statistics 3: 222-248.
(pdf)
- Huelsenbeck, J.P., C. Ane, B. Larget, and F. Ronquist (2008).
A Bayesian Perspective on a Non-parsimonious Parsimony Model.
Systematic Biology 57:406-419.
(pdf)
- Lakner, C., P. van der Mark, J.P. Huelsenbeck, B. Larget, and F. Ronquist (2008).
Efficiency of MCMC Tree Proposals in Bayesian Phylogenetics.
Systematic Biology 57:86-103.
(pdf)
- Ane C., B. Larget, D.A. Baum, S.D. Smith, and A. Rokas (2007).
Bayesian Estimation of Concordance among Gene Trees
Molecular Biology and Evolution: 24: 412-426.
(pdf)
(errata pdf)
- Luo, R., A.L. Hipp, and B. Larget (2007).
A Bayesian Model of AFLP Marker Evolution and Phylogenetic Inference.
Statistical Applications in Genetics and Molecular Biology 6(1): Article 11.
(pdf)
- Reynal, S., B. Larget, and G. Broderick (2006).
Effectiveness of sample duplication to control error in ruminant digestion studies.
Journal of Dairy Science 89: 3501-3504.
(pdf)
- Ronquist, F., B. Larget, J.P. Huelsenbeck, J.B. Kadane, D.L. Simon, and P. van der Mark (2006).
Phylogenetic MCMC Algorithms are not Misleading.
Science 312: 367.
Technical comment on Mossel and Vegoda (2005).
``Phylogenetic MCMC Algorithms Are Misleading on Mixtures of Trees''
in Science.
(pdf)
- Holder, M.T., P.O. Lewis, D.L. Swofford, and B. Larget (2005).
Hastings ratio of the LOCAL proposal used in Bayesian phylogenetics.
Systematic Biology 54: 961-965.
(pdf)
- Larget, B., D.L. Simon, and J.B. Kadane (2005).
A Bayesian approach to the estimation of ancestral genome arrangements.
Molecular Phylogenetics and Evolution 36: 214-223.
(pdf)
- Larget, B., D.L. Simon, J.B. Kadane, D. Sweet (2005).
A Bayesian analysis of metazoan mitochondrial genome arrangements.
Molecular Biology and Evolution 22: 486-495.
(pdf)
- Huelsenbeck, J.P., B. Larget, and M. Alfaro (2004).
Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
Molecular Biology and Evolution 21: 1123-1133.
(pdf)
- Atallah, Z. K., B. Larget, X. Chen, and D.A. Johnson (2004).
High genetic diversity, phenotypic uniformity
and evidence of outcrossing in Sclerotinia sclerotiorum
in the Columbia Basin of Washington State.
Phytopathology 94: 737-742.
- Larget, B. (2004).
Introduction to Markov Chain Monte Carlo Methods in Molecular Evolution.
In Statistical Methods in Molecular Evolution,
Rasmus Nielsen (editor),
Springer-Verlag, New York, New York.
- Schloss, P.D., B. Larget, and J. Handelsman (2004).
Integration of microbial ecology and statistics: a test to compare gene libraries.
Applied and Environmental Microbiology 70: 5485-5492.
- Huelsenbeck, J. P., B. Larget, R. E. Miller, and F. Ronquist (2002).
Potential applications and pitfalls of Bayesian inference of phylogeny.
Systematic Biology 51: 673-688.
-
Huelsenbeck, J., B. Rannala, and B. Larget (2002).
A statistical perspective for reconstructing the history of host-parasite associations.
In Page, R (Ed.),
Tangled Trees: Phylogenies, Cospeciation, and Coevolution.
The University of Chicago Press.
-
Larget, B., D. L. Simon, and J.B. Kadane (2002).
On a Bayesian approach to phylogenetic inference
from animal mitochondrial genome arrangements (with discussion).
Journal of the Royal Statistical Society B 64: 681-693.
-
Simon, D. L. and B. Larget (2001).
Phylogenetic inference from mitochondrial genome arrangement data.
In Alexandrov, V. N., J. Dongarra, B. Juliano, R. Renner, C. Tan (Ed.),
Computational Science - ICCS 2001.
Springer-Verlag Lecture Notes in Computer Science, 2074: 1022-1028.
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