Xing, M., Lee, H., Morrissey, Z., Chung, M.K., Phan, K.L., Klumpp, H., Leow, A., Ajilore, O. 2019 Altered dynamic electroencephalography state-space features of emotion regulation in social anxiety. NeuroImage, 196:338-349

2018

2017

1. Chung, M.K., Vilalta, V.G., Lee, H., Rathouz, P.J., Lahey, B.B., Zald, D.H. 2017 Exact topological inference for paired brain networks via persistent homology. Information Processing in Medical Imaging (IPMI) 10265:299-310 (selected for oral, 20% rate) MATLAB. Extended version: arXiv:1509.04771 PMCID: PMC5654491
   

1. 
   
2. Chung, Hanson, J.L., Adluru, Aleander, A.L., Davidson, R.J., Pollak, S.D.2017. Exponential decay law for the structural brain network of maltreated children. Proceeding of International Society of Magnetic Resonance in Medicine (ISMRM) 25:3493
3. 
   

1. Chung, M.K., Vilalta, V.G., Rathouz, P.J., Lahey, B.B., Zald, D.H. 2017 Hyper network analysis on paired images. Proceeding of International Society of Magnetic Resonance in Medicine (ISMRM) 25:0958 Lecture (selected for oral)
2.  
   

2016

Chung, M.K., Hanson, J.L., Pollak, S.D. 2016. Statistical analysis on brain surfaces, Handbook of Neuroimaging Data Analysis. 233-262 (invited paper)

Wang, Y., Chung, M.K., Vorperian, H.K. 2016. Composite growth model applied to human oral and pharyngeal structures and identifying the contribution of growth types. Statistical Methods in Medical Research. 25:1975-1990

9. Lee, H., Chung, M.K., Kang, H., Kim, E., Huh, Y., Hahm, J., Kim, Y.K., Lee, D.S. 2016 Shape variability in the dynamics of resting-state functional network and relationship with age. 2016. Organization for Human Brain Mapping (OHBM) annual meeting. poster. (selected for oral)

10. Chung, M.K., Vilalta, V.G., Rathouz, P.J., Lahey, B.B., Zald, D.H. 2016 Heritability of large-scale functional brain networks. Organization for Human Brain Mapping (OHBM). Lecture, Poster
    (invited talk)

1. 
   

2. 2015

   Chung, M.K., Hanson, J.L., Ye, J., Davidson, R.J. Pollak, S.D. 2015 Persistent homology in sparse regression and its application to brain morphometry. IEEE Transactions on Medical Imaging, 34:1928-1939   arXiv:1409.0177  PMCID: PMC4629505
3. 
   

1. Kim, W.H., Bendlin, B.B., Chung, M.K., Johnson, S.C., Singh, V. 2015. Statistical inference models for image datasets with systematic variations, Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 4795-4803
2. 
   
3. Kim, W.H., Adluru, N., Chung, M.K., Okonkwo, C.O., Johnson, S.C., Bendlin, B.B., Singh, V. 2015. Multi-resolution statistical analysis of brain connectivity graphs in preclinical Alzheimer’s disease. NeuroImage 118:103-117
4. 
   
5. Wang, Y., Chung, M., Bachhuber, D.R.W., Schaefer, S.M., van Reekum, C.M., Davidson, R.J. 2015 LARS network filtration in the study of EEG brain connectivity, IEEE 12th International Symposium on Biomedical Imaging (ISBI) 30-33
6. 
   
7. Wang, Y., Ombao, H., Chung, M.K. 2015 Topological epilepsy seizure detection in electroencephalographic signals, IEEE 12th International Symposium on Biomedical Imaging (ISBI) 351-354 (selected for oral)

1. Kim, W.H., Singh, V., Chung, M.K., Adluru, N., Bendlin, Johnson, S.C. 2015 Multi-resolution statistical analysis on graph structured data in neuroimaging EEE 12th International Symposium on Biomedical Imaging (ISBI) 1548-1551 (selected for oral)
2. 
   
3. Lee, M.-H., Kim, D.Y., Lee, S.H., Kim, J.U., Chung, M.K. 2015. Comparisons of topological properties in autism for the brain network construction methods, Proceedings of SPIE Medical Imaging vol. 9413, 941323. (poster award)

Chung, M.K., Qiu, A., Seo S. Vorperian, H.K. 2015. Unified heat kernel regression for diffusion, kernel smoothing and wavelets on manifolds and its application to mandible growth modeling in CT images, Medical Image Analysis. 22:63-76  arXiv:1409.6498

1. Hosseinbor, A.P., Chung, M.K.,  Schaefer, S.M., van Reekum, Perchke-Schmitz L., Sutter, M., Alexander, A.L., Davidson, R.J. 2015 4D hyperspherical harmonic (HyperSPHARM) representation of surface anatomy: a holistic treatment of multiple disconnected anatomical structures, Medical Image Analysis 22:89-101
2. 
   
3. Hosseinbor, A.P., Chung, M.K., Wu, Y.-C., Bendlin, B.B., Alexander, A.L. 2015 A 4D hyperspherical interpretation of q-space, Medical Image Analysis 21:15-28
4. 
   
5. Qiu, A., Lee, A., Tan.M., Chung, M.K. 2015. Manifold learning on brain functional networks in aging, Medical Image Analysis 20:52-60 

2014

1. Ryu, W.S., Woo, S.H., Schellingerhout, D., Chung, M.K. et al. 2014 Grading and interpretation of white matter hyperintensities using statistical maps, Stroke 45:3567-3575
2. 
   
3. Khalid, A., Kim, B.S., Chung, M.K., Ye, J.C., Jeon, D. 2014. Tracing the evolution of multi-scale functional notworks in a mouse model of depression using persistent brain network homology, NeuroImage 101:351-363
4. 
   
5. Chung, M.K., Schaefer, S.M., van Reekum, C. M., Schmitz, L.P., Sutterer, M., Davidson, R.J. 2014. A unified kernel regression for diffusion wavelets on manifolds detects aging-related changes in the amygdala and hippocampus, 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science(LNCS) 8674:791-298
6. 
   
7. Hosseinbor, A.P., Kim, W.H., Adluru, N., Acharya, A., Vorperian, H.K., Chung, M.K. 2014.  The 4D hyperspherical diffusion wavelet: a new method for the detection of localized anatomical variation, 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science(LNCS) 8675:65-72
8. 
   
9. Lee, H., Chung, M.K., Kang, H., Lee, D.S. 2014. Hole detection in metabolic connectivity of Alzheimer's disease using k-Laplacian, 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science(LNCS) 8675:297-304
10.  
    
11. Kim, H.J., Adluru, N., Collins, M.D., Chung, M.K., Bendlin, B.B., Johnson, S.C., Davidson, R.J., Singh, V. 2014. Multivariate general linear models (MGLM) on Riemannian manifolds with applications to statistical analysis of diffusion weighted Images, The IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2705-2712
12. 
    
13. Du, J., Hosseinbor, A.P., Chung, M.K., Bendlin, B.B., Suryawanshi, G., Alexander, A.L., Qiu, A. 2014. Diffeomorphic metric mapping and probabilistic atlas generation of hybrid diffusion imaging based on BFOR signal basis, Medical Image Analysis 18:1002-1014
14. 
    
15. Kim, W.H., Singh, V., Chung, M.K., Hinrichs, C., Pachauri, D., Okonkwo, O.C., Johnson, S.C. 2014. Multi-resolution shape features via non-Euclidean wavelets: Applications to statistical analysis of cortical thickness. NeuroImage 93:107-123.
16. 
    
17. Wang, Y., Ombao, H., Chung, M.K. 2014. Persistence landscape of functional signal and its application to epileptic electroencaphalogram data, ENAR Distinguished Student Paper Award (20 awards out of 169 submissions, 11.8% rate)
18. 
    
19. Chung, M.K., Kim, S.-G., Schaefer, S.M., van Reekum, C. M., Schmitz, L.P., Sutterer, M., Davidson, R.J. 2014. Improved statistical power with a sparse shape model in detecting an aging effect in the hippocampus and amygdala, Proceedings of SPIE Medical Imaging 9034, 90340Y

1. 2013
   

2. Hanson, J.L., Adluru, N., Chung, M.K., Alexander, A.L., Davidson, R.J., Pollak, S.D. 2013. Early neglect is associated with alterations in white matter integrity and cognitive functioning, Child Development 84:1566-1578
3. 
   
4. Kim, W.H., Adluru, N., Chung, M.K., Kumar, A., Altshuler, L., Moody, T., GadElkarim, J., Singh, V., Leow, A. 2013. Multi-resolution brain network filtering and analysis via wavelets on non-Euclidean space, 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8151:643-651 (acceptance 32.8%).
5. 
   
6. Hosseinbor, A.P., Chung, M.K., Schaefer, S.M., van Reekum, C., Peschke-Schmitz, L., Sutterer, M., Alexander, A.L., Davidson, R.J. 2013. 4D Hyperspherical harmonic (HyperSPHARM) representation of  multiple disconnected brain subcortical structures, 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8149:598-605 (acceptance 32.8%).
7. 
   
8. Hosseinbor, A.P., Chung, M.K., Wu, Y.-C., Bendlin, B.B., Alexander, A.L. 2013. A 4D hyperspherical interpretation of q-space, 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8151:501-509 (acceptance 32.8%).
9. 
   
10. Chung, M.K., Hanson, J.L., Lee, H., Adluru, N., Alexander, A.L., Davidson, R.J., Pallak, S.D. 2013. Persistent homological approach to detecting white matter abnormality in maltreated children: MRI and DTI multimodal study. 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8149:300-307 (acceptance 32.8%).
11. 
    
12. Kim, W.H., Chung, M.K., Singh, V. 2013. Multi-resolution shape analysis via non-Euclidean wavelets: applications to mesh segmentation and surface alignment problem. Computer Vision and Pattern Recognition (CVPR) 2139-2146. PMCID: PMC3879264

Chung, M.K. 2013. Statistical and Computational Methods in Brain Image Analysis.  Chapman & Hall/CRC. DATA/MATLAB

1. Du, J., Hosseinbor, A.P., Chung, M.K., Bendlin, B.B., Syryawanshi, G., Alexander. A.L., Qiu, A. 2013. Diffeomorphic metric mapping of hybrid diffusion imaging based on BFOR signal basis. Information Processing in Medical Imaging (IPMI). Lecture Notes in Computer Science (LNCS). 7917:147-158.
2. 
   
3. Whyms, B. J., Vorperian, H.K., Gentry, L. R., Schimek, E.M., and Bersu, E. T. Chung, M.K. 2013. The effect of computed tomographic scanner parameters and 3-dimensional volume rendering techniques on the accuracy of linear, angular, and volumetric measurements of the mandible. Oral Surgery, Oral Medicine, Oral Pathology, and Oral Radiology Journal. 115:682-691. PMCID: PMC3633147
4. 
   
5. Hosseinbor, A.P., Chung, M.K., Wu, Y.-C., Alexander, A.L. 2013. Bessel Fourier orientation reconstruction (BFOR): an analytical diffusion propagator reconstruction for hybrid diffusion imaging and computation of q-space indices, NeuroImage 64:650-670.

2012

Chung, M.K. 2012 Gaussian kernel smoothing arXiv:2007.09539

Chung, M.K. 2012. Computational Neuroanatomy: The Methods, World Scientific Publishing, Singapore

1. Chung, M.K., Lee, H., Arnold, A. 2012. Persistent homological structures in compressed sensing and sparse likelihood, NIPS Workshop on Algebraic Topology and Machine Learning.
2. 
   
3. Lee, H., Kang, H., Chung, M.K., Kim, B.-N., Lee, D.S. 2012 Weighted functional brain network modeling via network filtration, NIPS Workshop on Algebraic Topology and Machine Learning.
4. 
   
5. Kim, W.H., Pachauri, D., Hatt, C., Chung, M.K., Johnson, S.C., Singh, V. 2012. Wavelet based multi-scale shape features on arbitrary surfaces for cortical thickness discrimination, Advances in Neural Information Processing Systems (NIPS) (acceptance 25.2%)
6. 
   
7. Hosseinbor, A.P., Chung, M.K., Wu, Y.-C., Fleming, J.O., Field, A.S., Alexander, A.L. 2012. Extracting quantitative measures from EAP: a small clinical study using BFOR. 15th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 7511:280-287 (acceptance 32%)
8. 
   
9. Hanson, J.L., Chung, M.K., Avants, B.B., Rudolph, K.D., Shirtcliff, E.A., Gee, J.C., Davidson, R.J., Pollak, S.D. 2012. Structural variations in prefrontal cortex mediate the relationship between early childhood stress and spatial working memory, The Journal of Neuroscience 32:7917-7925.

Lee, H., Kang, H.K., Chung, M.K., Kim, B.-N., Lee, D.S. 2012. Persistent brain network homology from the perspective of dendrogram, IEEE Transactions on Medical Imaging. 31:2267-2277. Different version Technical Report 228.

1. Lee, H., Chung, M.K., Kang, H., Kim, B.-N., Lee, D.S. 2012. Edge selection method preserving the topological features of brain network. 18th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 7457.  Poster (selected for oral)
2. 
   
3. Chung, M.K., Adluru, N., Lainhart, J.E., Lange, N., Alexander, A.L. 2012. Electrical Circuit model for white matter fiber tracts in diffusion tensor imaging. 18th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 7250. Poster
4. 
   
5. Kim, S.-G., Lee, H., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2012. Agreement between the white matter connectivity based on the tensor-based morphometry and the volumetric white matter parcellations based on diffusion tensor imaging. IEEE International Symposium on Biomedical Imaging (ISBI) 42-45.
6. 
   
7. Kim, S.-G., Chung, M.K., Schaefer, S.M., van Reekum, C., Davidson, R.J. 2012. Sparse shape representation using the Laplace-Beltrami eigenfunctions and its application to modeling subcortical structures. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). 25-32. (selected for oral) Matlab

2011

1. 
   
2. Kim, S.-G., Chung, M.K., Seo, S., Schaefer, S.M., van Reekum, C., Davidson, R.J. 2011. Heat kernel smoothing via Laplace-Beltrami eigenfunctions and its application to subcortical structure modeling. Pacific-Rim Symposium on Image and Video Technology (PSIVT). Lecture Notes in Computer Science (LNCS). 7087:36-47. (selected for oral) Matlab
3. 
   
4. Adluru, N., Chung, M.K., Lange, N.T., Lainhart, J.E., Alexander, A.L. 2011. Applications of epsilon radial networks in neuroimage analyses. Pacific-Rim Symposium on Image and Video Technology (PSIVT). Lecture Notes in Computer Science (LNCS). 7087:236-247 (selected for oral).
5. 
   
6. Gallagher, C.L., Oakes, T.R., Johnson, S.C., Chung, M.K., Holden, J.E., Bendlin, B.B., McLaren, D.G., Xu, G., Nickles, R.J., Pyzalski, R., DeJesus, O., Brown, W.D. 2011. Rate of 6-[18F] fluorodopa uptake decline in striatal subregions in Parkinson's disease. Movement Disorders. 26:614-620.
7. 
   
8. Gallagher, C.L., Johnson, S.C., Bendlin, B.B., Chung, M.K., Holden, J.E., Oakes, T.R., Brooks, B.R., Konopacki, R.A., Dogan, S., Abbs, J.H., Xu, G., Nickles, R.J., Pyzalski, R.W., DeJesus, O.T., Brown, W.D. 2011. A longitudinal study of motor performance and striatal [18F] fluorodopa uptake in Parkinson’s disease, Brain Imaging and Behavior, 5:203-211.

Chung, M.K., Dalton, K.M, Kelley, D.J., Davidson, D.J. 2011. Mapping brain-behavior correlations in autism using heat kernel smoothing, Quantitative Bio-Science 30:75-83. (invited paper)

1. Pachauri, D., Hinrichs, C., Chung, M.K., Johnson, S.C., Singh, V. and ADNI. 2011. Topology-based kernels with application to inference problems in Alzheimer's disease. IEEE Transactions on Medical Imaging. 30:1760-1770.

Lee, H., Chung, M.K., Kang, H., Kim, B.-N., Lee, D.S. 2011. Computing the shape of brain network using graph filtration and Gromov-Haudorff metric. 14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 6892:302-309.  (selected for oral, oral acceptance 4.15%)

1. Hosseinbor, A.P., Chung, M.K., Wu, Y.-C., Alexander, A.L. 2011 Bessel Fourier Orientation Reconstruction: An Analytical EAP Reconstruction using Multiple Shell Acquisitions in Diffusion MRI. 14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 6892:217-225.  (acceptance rate 30%).
2. 
   

Hosseinbor, A.P., Chung, M.K., Wu, Y.-C., Alexander, A.L. 2011 Bessel Fourier orientation reconstruction: Using heat equation & multiple shell acquisitions to reconstruct diffusion propagator. Proceeding of International Society of Magnetic Resonance in Medicine (ISMRM) 19:1927

1. Chung, M.K., Seo, S., Adluru, N., Vorperian, H.K. 2011 Hot spots conjecture and its application to modeling tubular structures. 2nd International Workshop on Machine Learning in Medical Imaging (MLMI). Lecture Notes in Computer Science (LNCS). 7009:225-232 (selected for oral). MATLAB
2. 
   
3. Vorperian, H.K., Wang, S., Schimek, E.M., Durtschi, R.B., Kent, R.D., Gentry, L.R., Chung, M.K. 2011. Developmental sexual dimorphism of the oral and pharyngeal portions of the vocal tract: An imaging study. The Journal of Speech, Language and Hearing Research. 54:995-1010. (received Editor's Award for the best paper in 2011) PMCID: PMC3135757
4. 
   

Lee, H., Lee, D.S., Kang, H., Kim, B.-N., Chung, M.K. 2011. Sparse brain network recovery under compressed sensing. IEEE Transactions on Medical Imaging. Special Issue on Compressed Sensing. 30:1154-1165.

1. Lee, H., Chung, M.K., Kang, H., Kim, B.-N., Lee, D.S. 2011. Persistent network homology from the perspective of dendrograms. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM).  Poster (selected for oral, NIH travel award)
2. 
   

131. Chung, M.K. Hanson, J.L., Davidson, R.J., Pollak, S.D. 2011. Effect of family income on hippocampus growth: longitudinal study. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 2697. Poster
132. 
     
133. Lee, H., Chung, M.K., Kang, H., Kim, B.-N., Lee, D.S. 2011. Brain network from sparse and topological point of view. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). Poster
134. 
     
135. Seo, S., Chung, M.K., Dalton, K.M., Davidson, R.J. 2011. Multivariate cortical shape modeling based on sparse representation. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). Poster
     
136. 
     
137. Hahm, J., Chung, M.K., Kang, H., Lee, S.-K., Lee D.S. 2011. Voxel-based network using epsilon neighbor with regional constratint on medial temporal lobe epilepsy.  17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 
138. 
     
139. Kim, S.-G., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2011. White matter structural connectivity without diffusion tensor imaging. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). Poster
140. 
     

1. Chung, M.K., Lee, H., Kim, P.T., Ye, J.C. 2011. Sparse topological data recovery in medical images. IEEE International Symposium on Biomedical Imaging (ISBI). 1125--1129. (invited paper)
2. 
   
3. Seo, S., Chung, M.K. 2011. Laplace-Beltrami eigenfunction expansion of cortical manifolds. IEEE International Symposium on Biomedical Imaging (ISBI) 372-375. (NIH travel award)
4. 
   
5. Kim, S.-G., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2011. Structural connectivity via the tensor-based morphometry. IEEE International Symposium on Biomedical Imaging (ISBI). 808-811.
6. 
   
7. Lee, H., Chung, M.K., Kang, H., Kim, B.-N., Lee D.S. 2011. Discriminative persistent homology of brain networks. IEEE International Symposium on Biomedical Imaging (ISBI). 841-844
8. 
   
9. Lee, H., Lee, D.S., Kang, H., Kim, B.-N., Chung, M.K. 2011. Sparse brain network using penalized linear regression. Proceedings of SPIE. 7965, 796517 (selected for oral)
10. 
    
11. Chung, M.K., Adluru, N., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2011. Scalable brain network construction on white matter fibers. Proceedings of SPIE. 7962, 79624G.
12. 
    
13. Seo, S. Chung, M.K. Voperian, H.K. 2011. Mandible shape modeling using the second eigenfunction of the Laplace-Beltrami operator. Proceedings of SPIE. 7962, 79620Z (selected for oral)

2010

1. Adluru, N., Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2010. Characterizing brain connectivity using ε-radial nodes: application for classifying autism. MICCAI workshop on Computational Diffusion MRI
2. 
   
3. Hanson, J. Chung, M.K., Avants, B., Shirtcliff, E., Gee, J., Davidson, R.J. 2010. A tensor-based morphometry investigation of brain structure and behavioral risk. Journal of Neuroscience. 30:7466-7472

1. Chung, M.K. 2010. R-square, The Encyclopedia of Research Design, Sage Publications. (invited paper)
2. 
   
3. Chung, M.K. Adluru, N. Dalton, K. M., Alexander, A.L., Davidson, R.J. 2010. Characterization of structural connectivity in autism using graph networks with DTI. 16th Annual Meeting of the Organization for Human Brain Mapping. 938. (selected as e-poster as one of the best abstracts)
4. 
   
5. Kim, S.-G., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2010. Structural connectivity via the tensor-based morphometry. The Biannual Meeting of Korean Socieity of Human Brain Mapping. (best poster award)

131. Gallagher, C.L., Johnson, S.C., Chung, M.K., Brooks, B.R., Abbs, J., Dogan, S., Bendlin, B.B., Nickles, R.J., Brown, W.D., 2010. Bulbar Function Is Correlated with Neuroimaging Outcomes in Parkinson's Disease. Annual Meeting of American Academy of Radiology. P03.169.
132. 
     
133. Hanson, J.L., Chung, M.K., Davidson, R.J., Pollak, S.D. 2010. Development of the Medial Temporal Lobe: Cross-Sectional & Longitudinal Insights into Behavioral Changes, Society for Neurosicence Meeting.
     
134. 
     
135. Hahm, J., Park, H., Kang, H., Kang, E., Kim, Y.-K., Lee, S.-K., Lee, J. S., Chung, M., Lee, D. S. 2010. Changs in a language network of metabolic connectivity in medial temporal lobe epilepsy on FDG-PET. 16th Annual Meeting of the Organization for Human Brain Mapping. 322.
136. 
     
137. Kim, H., Kang, E., Kang, H., Lee H.-K., Lee, J. S., Chung, M. Kim, H.-W., Cho, S. C., Kim, B.-N., Lee, D. S. 2010. Right orbitofrontal connectivity in default mode network of children with autism spectrum disorder. 16th Annual Meeting of the Organization for Human Brain Mapping. 415.
138. 
     
139. Yim, Y.-K., Kang, H., Chung, M., Kang, E., Lee, H.-K., Kim, H.-W., Kim, B.-N., Lee, D. S. 2010. Anatomical dysconnectivity in children with attention defit/hyperactivity disorder. 16th Annual Meeting of the Organization for Human Brain Mapping. 485.
140. 
     
141. Kim, E., Kang, H., Chung, M., Kang, E., Lee, H.-J., Song, J.-J., Oh, S.H., Lee, D. S. 2010. Differences in anatomical networks between post- and pre/peri-lingual deaf using gray matter density.  16th Annual Meeting of the Organization for Human Brain Mapping. 1529. 
142. 
     
143. Kang, H., Kim H., Kang, E., Lee, H.-K., Chung, M., Lee, J. S., Kim, H.-W., Cho, S. C., Kim, B.-N., Lee, D. S. 2010. Differences in metabolic connectivity between atusim and attention deficit/hyperactivity disorder. 16th Annual Meeting of the Organization for Human Brain Mapping. 417. 
144. 
     
145. Hanson, J.L., Chung, M.K., Avants, B., Shirtcliff, E.A., Schlaak, M., Davidson, R.J., Pollak, S.D. 2o10. Effects of Early Deprivation and Neglect on Adolescent Brain Structure and Neuropsychological Functioning. Biennial Meeting for Society for  Research on Adolescence. 
146. 
     

2009

1. Worsley, K.J., Taylor, J.E., Carbonell, F., Chung, M.K., Duerden, E., Bernhardt, B., Lyttelton, O., Boucher, M., Evans, A.C. 2009. SurfStat: A Matlab toolbox for the statistical analysis of univeriate and multivariate surface and volumetric data using linear mixed effects models and random field theory. 15th Annual Meeting of the Organization for Human Brain Mapping. 972.
2. 
   
3. Adluru, N., Hinrichs, C., Chung, M.K., Lee, J.E., Singh, V., Erin, D.B., Lange, L.T., Lainhart, J.E., Alexander, A.L. 2009. Classification in DTI using shapes of white matter tracts. IEEE Engineering in Medicine and Biology Society (EMBC).
4. 
   
5. Chung, M.K., Adluru, N., Lee, J.E., Lazar, M., Lainhart, J.E., Alexander, A.L. 2009. Efficient parametric encoding scheme for white matter fiber bundles. IEEE Engineering in Medicine and Biology Society (EBMC) (invited paper)

1. Khan, A.R., Chung, M.K., Beg, M.F. 2009. Robust atlas-based brain segmentation using multi-structure confidence-weighted registration. 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). (acceptance rate < 32%).
2. 
   
3. Durtschi, R.B., Chung, D., Gentry, L.R., Chung, M.K., Vorperian, H.K. 2009. Developmental craniofacial anthropometry: assessment of race effects. Clinical Anatomy. 22:800-808.

1. Chung, M.K., Wu,  Y.-C., Alexander, A.L. 2009. 3D functional representation of spasely sampled 2D cortical data.  IEEE International Symposium on Biomedical Imaging (ISBI). poster
2. 
   
3. Hinrichs, C., Singh, V., Mukherjee, L., Xu, G., Chung, M.K., Johnson, S.C. 2009. Spatialy augmented LP boosting for AD classification with evaulation on the ADNI dataset. NeuroImage 48:138-149. PMCID: PMC2773131

Hanson, J.L., Shritcliff, E.A., Chung, M.K., Oakes, T.R., Pollak, S.D., Davidson, R.J. 2009. Chronic life stress is associated with volumetric reductions in the corpus callosum. Society for Research in Child Development. Poster

2008

1. Vorperian, H.K., Wang, S., Chung, M.K., Schimek, E.M., Durtschi, R.B., Kent, R.D., Ziegert, A.J., Gentry, L.R. 2008. Anatomical development of the oral and pharyngeal portions of the vocal tract for males and females: an imaging study. The Journal of the Accoustical Soceity of America. 125:1666-1678. PMCID: PMC2669667
2. Lee, J.E., Chung, M.K., Lazar, M., DuBray, M.B., Kim, J., Bigler, E.D., Lainhart, J.E., Alexander, A.L. 2008. A study of diffusion tensor imaging by tissue-specific, smoothing compensated voxel-based analysis. NeuroImage 44:870-883.
3. 
   

Chung, M.K. Hartley, R., Dalton, K.M., Davidson, R.J. 2008. Encoding cortical surface by spherical harmonics.  Satistica Sinica 18:1269-1291 (Special Issue on Statistical Challenges and Advances in Brain Science). Matlab (invited paper) 

1. Chung, M.K. Lee, Jee Eun, Pack, G., Lazar, M., Lange, N.T., Lainhart, J.E., Alexander, A.L. 2008. A unified parametric model of white matter fiber tracts. MICCAI Workshop on Computational Diffusion MRI.
   
2. 
   
3. Chung, M.K.,Qiu, A., Nacewicz, B.M., Dalton, K.M., Pollak, S., Davidson, R.J. 2008. Tiling manifolds with orthonormal basis. 2nd MICCAI Workshop on Mathematical Foundations of Computational Anatomy (MFCA).
   
4. 
   
5. Singh, V., Mukherjee, L., Chung, M.K. 2008. Cortical surface thickness as a classifier: Boosting for autism classification. 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 5128:177-184.
6. 
   

Chung, M.K., Dalton, K.M., Davidson, R.J. 2008. . Tensor-based cortical surface morphometry via weighed spherical harmonic representation. IEEE Transactions on Medical Imaging 27:1143-1151 (invited submission based on MMBIA 2006 oral presentation). Matlab

1. Chung, D, Chung, M.K, Durtschi, R.B., Vorperian, H.K. 2008. Determining length-based measurement consistency from magnetic resonance images. Academic Radiology. 15:1322-1330.
2. 
   
3. Chung, M.K., Kelley, D.J., Dalton, K.M., Davidson, R.J. 2008. Quantifying cortical surface asymmetry via logistic discrimiant analysis. submitted. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). (selected for oral)
4. 
   
5. Chung, M.K. Nacewicz, B.M., Wang, S., Dalton, K.M., Pollak, S., Davidson, R.J. 2008. Amydala surface modeling with weighted spherical harmonics. 4th International Workshop on Medical Imaging and Augmented Reality (MIAR). Lecture Notes in Computer Science (LNCS) 5128:177-184 (selected for oral)
6. 
   
7. Kelley, D.J., Oakes, T.R., Greischar, L.L., Chung, M.K., Ollinger, J., Alexander, A.L., Shelton,S.E., Kalin, N., Davidson, R.J. 2008. Automatic physiological waveform processing for fMRI noise correction and analysis. PLoS ONE 3:e1751. 

131. Alexander, A., Lee, J.E., Ardekani, B., Chung, M.K., Bigler, E., Lainhart, J. 2008. Evaluation of DTI image analysis using nonlinear spatial normalization and tissue-specif, smoothing-compensated voxel based analysis: application in autism. 14th Annual Meeting for the Organization for Human Brain Mapping.
132. 
     
133. Chung, M.K., Kelley, D.J., Dalton, K.M., Davidson, R.J. 2008. Detection of local cortical asymmetry via discriminant power analysis. 14th Annual Meeting of the Organization for Human Brain Mapping. Poster.
134. Chung, M.K. 2008. A new validation technique for cortical data smoothing. 14th Annual Meeting of the Organization for Human Brain Mapping. Poster.

2007

1. Chung, M.K., 2007 Introduction to random fields, arXiv:2007.09660
2. 
   
3. Vorperian, H.K., Durtschi, R.B., Wang, S., Chung, M.K., Ziegert, A.J., Gentry, L.R. 2007. Estimating head circumference from pediatric imaging studies: an improved method. Academic Radiology. 14:1102-1107.

1. Lee, J.E., Bigler, E.D., Alexander. A.L., Lazar, M., Dubray, M.B., Chung, M.K., Johnson, M., Morgan, J., Miller, J.N., McMahon, W.M., Lu, J., Jeong, E.-K., Lainhart, J.E. 2007. Diffusion tensor imaging of white mater in the superior temporal gyrus and temporal stem in autism.   Neuroscience Letters. 424:127-132.
2. 
   
3. Chung, M.K. Dalton, K.M., Davidson, R.J. 2007. . Encoding neuroanatomical information using weighted spherical harmonic representation. IEEE Statistical Signal Processing Workshop. Poster. (invited paper)
4. 
   
5. Chung, M.K., Dalton, K.M., Davidson, R.J. 2007. Unified cortical asymmetry analysis in autism via weighted-SPHARM. Human Brain Mapping conference. Poster (selected as one of the best 65 abstracts)
6. 
   
7. Shen, L., Saykin, A.L., Chung, M.K., Huang, H. 2007. Morphometric analysis of hippocampal shape in mild cognitive impairment: an imaging genetics study. IEEE 7th International Symposium on Bioinformatics and Bioengineering (BIBE). 211-217.
8. 
   

Chung, M.K., Dalton, K.M., Shen, L., L., Evans, A.C., Davidson, R.J. 2007. Weighted Fourier series representation and its application to quantifying the amount of gray matter. Special Issue of  IEEE Transactions on Medical Imaging, on Computational Neuroanatomy. 26:566-581. (invited paper). Matlab

1. Oakes, T.R., Fox, A.S., Johnstone, T., Chung, M.K., Kalin, N., Davidson, R.J. 2007. Integrating VBM into the general linear model with voxelwise anatomical covariates. NeuroImage 34:500-508.
2. 
   
3. Chung, M.K. 2007. Correlation Coefficient, The Encyclopedia of Measurement & Statistics, Sage Publications. (invited paper)
4. 
   

131. Vorperian, H.K., Schimek, E.M., Wang, S., Chung, M.K., Kent, R.D., Durtschi, R.B., Ziegert, A.J., Gentry, L.R. 2007. Anatomic development of the vocal tract during the first two decades of life: Evidence on perpubertal sexual dimorphism from MRI and CT studies. Acoustical Society of America (ASA) 154th meeting. Poster
132. 
     
133. Wang, S., Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2007. Automated diagnosis of autism using Fourier series expansion of corpus callosum boundary. Human Brain Mapping conference. Poster
134. 
     
135. Kelley, D.J., Dalton, K.M., Nacewicz, B.M., Johnstone, T., Chung, M.K., Oakes, T.R., Alexander, A.L., Davidson, R.J. 2007. Autism eye gaze behavior depends on functional amygdala connectivity with the superior temporal area. Human Brain Mapping conference. Poster 
136. 
     
137. Lee, J.E.  Chung, M.K., Hsu, D., Alexander, A.L. 2007. Probabilistic connectivity using Kullback-Leibler distance, International Socieity for Magnetic Resonance in Medicine (ISMRM) conference. Poster
138. 
     
139. Lee, J.E., Lazar, M., Alexander, A.L., Bigler, E., Chung, M.K., Hsu, D., Lainhart, J. 2007. Tissue-Specific, Smoothing-Compensated Voxel-Based Analysis of DTI Data. International Socieity for Magnetic Resonance in Medicine (ISMRM) conference. Poster
140. 
     

2006

1. Shen, L., Saykin, A.J., Chung, M.K., Huang, H., Ford, J., Makedon, F., McHugh, T.L., Rhodes, H. 2006.  Morphometric analysis of genetic variation in hippocampal shape in mild cognitive impairment: role of an IL-6 promoter polymorphism. Computational Systems Bioinformatics (CSB).
2. 
   
3. Chung, M.K., Shen, L., Dalton, K.M., Davidson, D.J. 2006.  . Multi-scale voxel-based morphometry via weighed spherical harmonic representation. Third International Workshop on Medical Imaging and Augmented Reality (MIAR). Lecture Notes in Computer Science (LNCS). 4091:36-43 (selected for oral)
4. 
   
5. Shen, L., Chung, M.K. 2006.  Large-scale modeling of parametric surfaces using spherical harmonics. Third International Symposium on 3D Data Processing, Visualization and Transmission (3DPVT).
6. 
   
7. Chung, M.K., Robbins, S., Dalton, K.M., Wang, S., Evans, A.C., Davidson, R.J. 2006. Tensor-based cortical morphometry via weighted spherical harmonic representation. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). (selected for oral presentation as one of the best 13 papers out of 112 submissions)
8. 
   
9. Chung, M.K. 2006. Heat kernel smoothing on unit sphere..  IEEE International Symposium on Biomedical Imaging (ISBI) 1430.
10. 
    
11. Lee, J.E., Chung, M.K., Alexander, A.L. 2006. . Evaluation of anisotropic filters for diffusion tensor imaging.  IEEE International Symposium on Biomedical Imaging (ISBI) 1241.
12. 
    
13. Lee, J.E., Chung, M.K., Alexander, A.L. 2006. Evaluation of anisotropic filtering for DTI as a function of SNR. Proceedings of the 14th ISMRM Scientific meeting (selected for oral)

2005

Chung, M.K., Robbins,S., Dalton, K.M., Davidson, Alexander, A.L., R.J., Evans, A.C. 2005. Cortical thickness analysis in autism via heat kernel smoothing. NeuroImage 25:1256-1265 (selected for cover illustration) Matlab

1. Chung, M.K., Robbins, S., Evans, A.C. 2005. Unified statistical approach to cortical thickness analysis. Information Processing in Medical Imaging (IPMI). Lecture Notes in Computer Science (LNCS) 3565:627-638. (acceptance rate < 26%). Matlab
2. 
   
3. Shen, L., Saykin, A., McHugh, T., West, J., Rabin, L., Wishart, H., Chung, M.K., Makedon, F. 2005. Morphometric analysis of 3D surfaces: appliction to hippocampal shape in mild cognitive impairment. 6th. International conference on Computer vision, Pattern Recognition and Image Processing (CVPRIP). 2005.

Chung, M.K., Lee J.E., Alexaender, A.L. 2005. Anisotropic kernel smoothing in diffusion tensor imaging: theoretical framework. TR1109. Department of Statistics, University of Wisconsin-Madison. (ENAR 2005 invited talk).

131. Vorperian, H.K., Chung, M.K., Gentry, L.R., Kent, R.D., Durtschi, R.B., Wang, S., Choih, C.S., Ziegert, A.J. 2005. Vocal tract length development during the first two decades of life: a magnetic resonance imaging study. 150th meeting of Acoustical Society of America (ASA). Poster.
132. 
     
133. Shen, L., Saykin, A., McHugh, T., West, J., Rabin, L., Wishart, H., Chung, M.K., Makedon, F. 2005. Morphometric MRI studie of hippocampal shape in MCI using spherical harmonics. Alzheimer's Association International Conference on Prevention of Dementia.
134. 
     
135. Chung, M.K., Tulaya, L. 2005. Introducing heat and geodesic kernel smoothing on cortical manifolds, 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
136. 
     
137. Chung, M.K., Kim, D.M., Robbins, S., Evans, A.C., Davidson, R.J. 2005. Partial correlation mapping of cognitive measure and cortical thickness in autism, 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
138. 
     
139. Xie, X., Chung, M.K., Grace, W. 2005. Magnetic resonance image segmentation with thin plate spline thresholding. 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
140. 
     
141. Levy, D.M., Fisher, T.G., Chung, M., Lee, J.H., Lazar, M., Oakes, T.R., Kim, J.S., Alexander, A.L. 2005. Characterization of Voxel-Based Variance in DTI Measurements, 13th Meeting of International Society for Magnetic Resonance in Medicine.
142. 
     
143. Lee, J.H., Chung, M.K., Oakes, T.E., Alexander, A.L. 2005. Anisotropic Gaussian kernel smoothing of DTI data. 13th Meeting of International Society for Magnetic Resonance in Medicine. 2253.

2004

1. Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004.  Less white matter concentration in autism: 2D voxel-based morphometry. NeuroImage 23:242-251. Data/Matlab

Pizzagalli, D.A., Oakes, T.R, Fox, A.S., Chung, M.K., Larson, C.L., Abercrombie, H.C., Schaefer, S.M., Benca, R.M., Davidson, D.J. 2004 Functional but not structural subgenual prefrontal cortex abnormalities in melcancholia. Molecular Psychiatry 9:393-405

1. Wu, Y.-C., Field, A.S., Chung, M.K., Badie, B., Alexander, A.L. 2004. Quantitative analysis of diffusion tensor orientation: theoretical framework Magnetic Resonance in Medicine 52:1146-1155.
2. 
   
3. Chung, M.K., Taylor, J. 2004. Diffusion smoothing on brain surface via finite element method,  IEEE International Symposium on Biomedical Imaging (ISBI). 562. Poster. MATLAB

131. Chung, M.K. Tang, S. 2004. Nonparametric estimation of cortical thickness, 10th Annual Meeting of the Organization for Human Brain Mapping. Budapest, Poster.
132. 
     
133. Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004. 2D Voxel-based morphometry shows less white matter concentration in autism, 10th Annual Meeting of the Organization for Human Brain Mapping. Poster.
134. 
     
135. Hoffmann, T.J., Chung, M.K., Dalton, K.M., Alexander, A.L., Wahba, G., Davidson, R.J. 2004. Subpixel curvature estimation of the corpus callosum via splines and its application to autism, 10th Annual Meeting of the Organization for Human Brain Mapping. Poster.
136. 
     

2003

1. Chung, M.K., Worsley, K.J., Robbins, S., Evans, A.C. 2003. Tensor-based brain surface modeling and analysis, The proceeding of IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Vol I 467-473 (acceptance rate < 24%). 
2. 
   
3. Chung, M.K., Worsley, K.J., Robbins,  S., Paus, P.,  Taylor, J., Giedd, J.N., Rapoport, J.L., Evans, A.C. 2003. Deformation-based surface morphometry with an application to gray matter Deformation, NeuroImage. 18:198-213. (invited paper based on 2001 OHBM abstract, selected for cover illustration)
4. 
   
5. Chung, M.K., Lazar, M., Alexander, A.L., Lu., Y., Davidson, R. 2003. Probabilistic connectivity measure in diffusion tensor imaging via anisotropic kernel smoothing, TR 1081. Department of Statististics, Universisty of Wisconsin-Madison

131. Chung, M.K., Alexander, A.L., Lu, Y. 2003. Connection Probability in Diffusion Tensor Imaging via Anisotropic Gaussian Kernel Smoothing, 9th Annual Meeting of the Organization for Human Brain Mapping.
132. 
     
133. Chung, M.K., Worsley, K.J., Paus, T., Robbins, S.,  Taylor, J., Giedd, J.N., Rapoport, J.L., Evans, A.C. 2003. Detecting Gray Matter Maturation via Tensor-based Surface Morphometry. 9th Annual Meeting of the Organization for Human Brain Mapping.
134. 
     

131. Fox, A., Oakes, T., Dalton, K.,  Chung, M.K. 2003.  Alexander, A.L., Davidson, R.,  Preserving Individual Differences for Voxel-Based Morphometry (VBM), 9th Annual Meeting of the Organization for Human Brain Mapping.
132. 
     
133. Pizzagalli, D.A., Chung, M.K., Oakes, T.R., Davidson, R.J. 2002. Subgenual Prefrontal and Orbitofrontal Cortex Dysfunction in Melancholia: Functional and Structural Correlates Using Concurrent EEG/PET Measurements and Voxel-Based MRI Moprhometry analyses, 42nd Annual Meeting of the Society for Psychophysiological Research, Washington, D.C.
134. 
     
135. Lu, Y., Chung, M.K. 2002.  An Area-Preserving Brain Suface Flattening Method, 8th Annual Meeting of the Organization for Human Brain Mapping.

2001

1. Chung, M.K., Worsley, K.J. , Paus, T., Cherif, C.,  Giedd, J.N.,  Rapoport, J.L,  Evans, A.C. 2001. A unified statistical approach to deformation-based morphometry, NeuroImage 14:595-606 (selected for cover illustration)
2. 
   
3. J.A. Hanley, L. Joseph, R.W. Platt,  Chung, M.K., Patric Belisle 2001. Visualizing the median as the minimum-deviation Location, The American Statistician, 55:150-152.
4. 
   
5. Chung, M.K. 2001. Statistical morphometry in neuroanatomy, PhD Thesis, McGill University.
6. 
   
7. Chung, M.K., K.J. Worsley, J. Taylor, J.O. Ramsay, S. Robbins, A.C. Evans 2001. Diffusion smoothing on the cortical Surface,  NeuroImage, 13:S95. PDF  Scanned PDF  poster
8. 
   
9. Taylor, J. ,Worsley, K.J., Chung, M.K., Evans, A.C. 2001. Thresholding non-stationary SPMs with an application to cortical surface mapping, NeuroImage 13S:264.
10. 
    
11. Chung, M.K., Worsley, K.J., Robbins S., Paus, T., Taylor, J., Giedd, J.N., Rapoport, J.L., Evans A.C. 2001. Statistical analysis of cortical surface area change, with an application to brain growth, Neuroimage 13S:96.
12. 
    
13. Chung, M.K., Worsley, K.J., Taylor, J., Ramsay, J.O. 2001.  Diffusion smoothing in brain imaging, The proceedings of the 53rd Session of the International Statistical Institute.

J.S. Kim, J.S. Lee, D.S. Lee, M.J. Jang, E. Kang, Chung, M.K., K.J. Worsley, S. Robbins, D.L. Collins, J.C. Kim, J-K. Chung, M.C. Lee 2001. Longitudinal analysis of local volume changes in brain of cortical deafness using F-18-FDG PET and deformation-based morphometry, NeuroImage, 13S:1202.

2000

1. Chung, M.K., Worsley, K.J., Cherif, C., Paus, T., Collins, D.L.,  Rapoport,  J.L., Evans, A.C. 2000. Statistiscal analysis of local volume change, with an application to brain growth, Annual Meeting of the Organization for Human Brain Mapping, NeuroImage 11S:611 poster (selected for oral and NIH travel award).
2. 
   
3. Chung, M.K., 2000. The Expectation of the Determinant of a Random Matrix, Image: The Bulletin of the International Linear Algebra Society, 23.

Technical reports and conference abstracts