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/*                                                                       */
/* Copyright 2003, Living Circuit LLC.                                   */
/*                                                                       */
/* For academic use with the following condition:                        */
/*                                                                       */
/* Material is provided "as is" and "as available", without any          */
/* warranty, and if you use it you do it at your own risk, with no       */
/* support agreement expressed or implied.                               */
/*                                                                       */
/* Any other use of this software is contingent on having a valid and    */
/* signed license agreement with Living Circuit (livingCircuit.com)      */
/*                                                                       */
/*  All other rights reserved.                                           */
/*                                                                       */
/*************************************************************************/
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/**                                        **/
/**                                        **/
/**     "pop_gen" reads does a long-       **/
/**     term population simulation based   **/
/**     on relative fitnesses and          **/
/**     mutation probabilities.            **/
/**                                        **/
/**     Written by Michael Molla           **/
/**     September, 2003                    **/
/**                                        **/
/**                                        **/
/**                                        **/
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//#define GENERATION_SIZE 10000
#define OUTPUT_PERIOD 200

#define DEFAULT_SEED 2222
#define PARAM_FILE_SUFFIX ".params"
#define TMP_FILE_SUFFIX ".new"

#define NUM_ALLILES 3
#define NUM_GENOTYPES 81
#define NUM_HAPLOID_GENOTYPES 9
#define MAX_FNAME 1024
#define MAX_LINE 4096

#define A_MUTATION_RATE 0
#define B_MUTATION_RATE 1

#define ONE_TO_TWO 0
#define TWO_TO_THREE 1
#define ONE_TO_THREE 2

#define RESEED_ADDITION 100
#define RESEED_FREQUENCY 1000000000 // <- This (large) number is in generations * pop_size