Brian S. Yandell
's Software Information
The general software material is migrating to
R Software Introduction for Stat 571
R Appendices for the Stat/For/Hort 571 Course Notes
Graphical Data Presentation with Emphasis on Genetic Data (R code for ASHS paper)
My Software Releases
: Routines for Generalized Cross Validation (free release in 1986; now part of base of
; Bates, Lindstrom, Wahba and Yandell 1987)
: Markov chain Monte Carlo inference for Quantitative Trait Loci. (free release in 1998; Satagopan, Yandell, Newton and Osborn 1996).
: Bayesian model Determination of the Number of QTLs using Reversible Jump MCMC. (free release in 1999; Satagopan and Yandell 1998).
: Quality Data Attributes Analysis. (proprietary release in 1999; Yandell and Tragon Corporation).
Practical Data Analsysis: library(pda)
for Splus and R. (free release in 1997; revised in 2000)
Microarray Data Analysis: library(pickgene)
for R. (free release in 2001; Lin et al. 2001;
Quantitative Population Ethology: library(ewing
for R. (free release in 2001; Ewing et al. 2001)
: Bayesian QTL mapping module for QTL Cartographer. (public domain release in 2001; Gaffney 2001)
: Bayesian interval mapping R library. (free release in 2002;
: QTL Bayesian Interval Mapping. Improved and totally revamped R library for model selection with Bayesan interval mapping, allowing for covariates and epistasis;
: QTL-driven dependent graphs R library (CRAN 2008); See Chaibub Neto E, Ferrara C, Attie AD, Yandell BS (2008) Inferring causal phenotype networks from segregating populations. Genetics 179 : 1089-1100. [
Last modified: wed 10 sep 2003 by Brian Yandell