function [pm qx qy] = setParametersPHMM

% emission probabilities in the match state (for Pair HMM)
pm = [0.175 0.035 0.035 0.005 ; 0.035 0.175 0.005 0.035; 0.035 0.005 0.175 0.035 ; 0.005 0.035 0.035 0.175];
qx = [0.25 0.25 0.25 0.25];
qy = [0.25 0.25 0.25 0.25];

end
