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gnDataBaseSource Member List

This is the complete list of members for gnDataBaseSource, including all inherited members.

• Clone() const=0 [pure virtual]
• Clone() const=0 [pure virtual]
• Close()=0 [pure virtual]
• GetContigID(const string &name) const=0 [pure virtual]
• GetContigListLength() const=0 [pure virtual]
• GetContigName(const uint32 i) const=0 [pure virtual]
• GetContigSeqLength(const uint32 i) const=0 [pure virtual]
• GetFilter() const=0 [pure virtual]
• GetOpenString() const=0 [pure virtual]
• GetSpec() const=0 [pure virtual]
• gnBaseSource() [inline]
• gnClone() [inline]
• gnDataBaseSource() [inline, private]
• HasContig(const string &name) const=0 [pure virtual]
• Open(string openString)=0 [pure virtual]
• Open()=0 [pure virtual]
• Read(const uint64 pos, char *buf, uint32 &len)=0 [pure virtual]
• SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS)=0 [pure virtual]
• SetFilter(gnFilter *pFilter)=0 [pure virtual]
• ~gnBaseSource() [inline, virtual]
• ~gnClone() [inline, virtual]
• ~gnDataBaseSourcee() [inline, virtual]

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