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gnFileContig Member List

This is the complete list of members for gnFileContig, including all inherited members.

• AddToSeqLength(const gnSeqI len) [inline]
• Clear()
• Clone() const [inline, virtual]
• GetFileLength() const [inline]
• GetFileStartEnd() const [inline]
• GetName() const [inline]
• GetRepeatSeqGapSize() const [inline]
• GetSectLength(gnContigSection i) const [inline]
• GetSectStartEnd(const gnContigSection i) const [inline]
• GetSeqLength() const [inline]
• gnClone() [inline]
• gnFileContig()
• gnFileContig(string nameStr, const uint64 pos, const uint64 len)
• gnFileContig(const gnFileContig &fc)
• HasRepeatSeqGap() const [inline]
• m_fileStartEnd [private]
• m_name [private]
• m_repeatSeqGap [private]
• m_repeatSeqGapSize [private]
• m_seqLength [private]
• m_startEndArray [private]
• SetFileEnd(const uint64 e) [inline]
• SetFileStart(const uint64 s) [inline]
• SetFileStartEnd(const pair< uint64, uint64 > se) [inline]
• SetName(string nameStr) [inline]
• SetRepeatGapSize(const uint64 gapSize)
• SetRepeatSeqGap(const boolean rsg) [inline]
• SetRepeatSeqGapSize(const pair< uint64, uint64 > rsgSize) [inline]
• SetRepeatSeqSize(const uint64 seqSize)
• SetSectEnd(const gnContigSection i, const uint64 e) [inline]
• SetSectStart(const gnContigSection i, const uint64 s) [inline]
• SetSectStartEnd(const gnContigSection i, const pair< uint64, uint64 > se) [inline]
• SetSeqLength(const gnSeqI len) [inline]
• ~gnClone() [inline, virtual]
• ~gnFileContig()

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