---

gnFileSource Member List

This is the complete list of members for gnFileSource, including all inherited members.

• Clone() const=0 [pure virtual]
• Close() [virtual]
• GetContigID(const string &name) const=0 [pure virtual]
• GetContigListLength() const=0 [pure virtual]
• GetContigName(const uint32 i) const=0 [pure virtual]
• GetContigSeqLength(const uint32 i) const=0 [pure virtual]
• GetFileContig(const uint32 contigI) const=0 [pure virtual]
• GetFilter() const [inline, virtual]
• GetOpenString() const [inline, virtual]
• GetSpec() const=0 [pure virtual]
• gnBaseSource() [inline]
• gnClone() [inline]
• gnFileSource() [inline]
• gnFileSource(const gnFileSource &gnfs)
• HasContig(const string &name) const=0 [pure virtual]
• m_ifstream [protected]
• m_newlineSize [protected]
• m_newlineType [protected]
• m_openString [protected]
• m_pFilter [protected]
• Open(string openString) [virtual]
• Open() [virtual]
• ParseStream(istream &fin)=0 [private, pure virtual]
• Read(const uint64 pos, char *buf, uint32 &bufLen) [virtual]
• SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS)=0 [pure virtual]
• SetFilter(gnFilter *filter) [inline, virtual]
• ~gnBaseSource() [inline, virtual]
• ~gnClone() [inline, virtual]
• ~gnFileSource() [inline, virtual]

---