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gnSourceSpec Member List

This is the complete list of members for gnSourceSpec, including all inherited members.

• Clear() [virtual]
• Clone() const [inline, virtual]
• CloneRange(const gnSeqI startI, const gnSeqI len) const [virtual]
• gnContigSpec::CloneRange(const uint32 startI, const uint32 len) const=0 [pure virtual]
• CropEnd(gnSeqI cropLen) [virtual]
• CropStart(gnSeqI cropLen) [virtual]
• GetLength() const [inline, virtual]
• GetName() const [inline, virtual]
• GetSource() const [inline, virtual]
• GetSourceContigIndex() const [inline, virtual]
• GetSourceLength() const [inline, virtual]
• GetSourceName() const [inline, virtual]
• GetStart() const [inline, virtual]
• gnBaseSpec() [inline]
• gnClone() [inline]
• gnContigSpec() [inline]
• gnSourceSpec()
• gnSourceSpec(gnBaseSource *m_pSource, const uint32 m_ContigIndex=ALL_CONTIGS, const gnSeqI start=0, const gnSeqI endI=GNSEQI_END, const boolean revComp=false)
• gnSourceSpec(const gnSourceSpec &s)
• IsCircular() const [inline, virtual]
• IsReverseComplement() const [inline, virtual]
• m_circular [protected]
• m_length [protected]
• m_name [protected]
• m_pSource [protected]
• m_reverseComplement [protected]
• m_SourceContigIndex [protected]
• m_sourceName [protected]
• m_start [protected]
• Read(const gnSeqI start, gnSeqC *buf, uint32 &bufLen) const [inline, protected, virtual]
• SeqRead(const gnSeqI start, gnSeqC *buf, uint32 &bufLen, const uint32 contigI) const [virtual]
• SetCircular(const boolean value) [inline, virtual]
• SetLength(const gnSeqI len) [inline, virtual]
• SetName(const string &name) [inline, virtual]
• SetReverseComplement(const boolean value) [virtual]
• SetSourceContigIndex(const uint32 contigI) [inline, virtual]
• SetSourceName(const string &sourceName) [inline, virtual]
• SetStart(const gnSeqI start) [inline, virtual]
• ~gnBaseSpec() [inline, virtual]
• ~gnClone() [inline, virtual]
• ~gnContigSpec() [inline, virtual]
• ~gnSourceSpec()

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