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gnDNXSource Member List

This is the complete list of members for gnDNXSource, including all inherited members.

Clone() const	gnDNXSource	[inline, virtual]
Close()	gnFileSource	[virtual]
DetermineNewlineType()	gnFileSource	[protected]
GetContigID(const string &name) const	gnDNXSource	[virtual]
GetContigListLength() const	gnDNXSource	[inline, virtual]
GetContigName(const uint32 i) const	gnDNXSource	[virtual]
GetContigSeqLength(const uint32 i) const	gnDNXSource	[virtual]
GetFileContig(const uint32 contigI) const	gnDNXSource	[virtual]
GetFilter() const	gnFileSource	[inline, virtual]
GetOpenString() const	gnFileSource	[inline, virtual]
GetSpec() const	gnDNXSource	[inline, virtual]
gnBaseSource()	gnBaseSource	[inline]
gnClone()	gnClone	[inline]
gnDNXSource()	gnDNXSource
gnDNXSource(const gnDNXSource &s)	gnDNXSource
gnFileSource()	gnFileSource	[inline]
gnFileSource(const gnFileSource &gnfs)	gnFileSource
HasContig(const string &name) const	gnDNXSource	[virtual]
m_DNXSpec	gnDNXSource	[private]
m_ifstream	gnFileSource	[protected]
m_newlineSize	gnFileSource	[protected]
m_newlineType	gnFileSource	[protected]
m_openString	gnFileSource	[protected]
m_pFilter	gnFileSource	[protected]
Open(string openString)	gnFileSource	[virtual]
Open()	gnFileSource	[virtual]
ParseStream(istream &fin)	gnDNXSource	[private, virtual]
Read(const uint64 pos, char *buf, uint32 &bufLen)	gnFileSource	[virtual]
SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS)	gnDNXSource	[inline, virtual]
SetFilter(gnFilter *filter)	gnFileSource	[inline, virtual]
ValidateName(string &name)	gnDNXSource	[private, static]
Write(gnSequence &sequence, const string &filename)	gnDNXSource	[inline, static]
Write(gnBaseSource *source, const string &filename)	gnDNXSource	[inline, static]
Write(gnGenomeSpec *spec, const string &filename)	gnDNXSource	[static]
~gnBaseSource()	gnBaseSource	[inline, virtual]
~gnClone()	gnClone	[inline, virtual]
~gnDNXSource()	gnDNXSource
~gnFileSource()	gnFileSource	[inline, virtual]

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