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gnMultiSpec Member List

This is the complete list of members for gnMultiSpec, including all inherited members.

AddFeature(gnBaseFeature *feat)	gnMultiSpec
AddHeader(gnBaseHeader *head, const uint32 i=UINT32_MAX)	gnMultiSpec	[virtual]
AddSpec(gnBaseSpec *spec, const uint32 i=UINT32_MAX)=0	gnMultiSpec	[pure virtual]
Clear()	gnMultiSpec	[virtual]
Clone() const=0	gnMultiSpec	[pure virtual]
CloneRange(const uint32 startI, const uint32 len) const=0	gnBaseSpec	[pure virtual]
CropEnd(gnSeqI cropLen)	gnMultiSpec	[virtual]
CropStart(gnSeqI cropLen)	gnMultiSpec	[virtual]
GetBrokenFeatures(const gnLocation &lt, vector< gnBaseFeature * > &feature_vector) const=0	gnMultiSpec	[pure virtual]
GetContainedFeatures(const gnLocation &lt, vector< gnBaseFeature * > &feature_vector, vector< uint32 > &index_vector) const=0	gnMultiSpec	[pure virtual]
GetFeature(const uint32 i) const=0	gnMultiSpec	[pure virtual]
GetFeatureListLength() const=0	gnMultiSpec	[pure virtual]
GetHeader(const uint32 i) const	gnMultiSpec	[inline, virtual]
GetHeader(const string &name, uint32 &i) const	gnMultiSpec	[virtual]
GetHeaderListLength() const	gnMultiSpec	[inline, virtual]
GetIntersectingFeatures(const gnLocation &lt, vector< gnBaseFeature * > &feature_vector, vector< uint32 > &index_vector) const=0	gnMultiSpec	[pure virtual]
GetLength() const	gnMultiSpec	[virtual]
GetName() const	gnBaseSpec	[inline, virtual]
GetSourceName() const	gnMultiSpec	[inline, virtual]
GetSpec(const uint32 i) const=0	gnMultiSpec	[pure virtual]
GetSpecByBase(const gnSeqI baseI) const=0	gnMultiSpec	[pure virtual]
GetSpecEndBase(const uint32 specI) const	gnMultiSpec	[virtual]
GetSpecIndexByBase(const gnSeqI baseI) const	gnMultiSpec	[virtual]
GetSpecIndexByName(const string &name) const	gnMultiSpec	[virtual]
GetSpecListLength() const=0	gnMultiSpec	[pure virtual]
GetSpecStartBase(const uint32 specI) const	gnMultiSpec	[virtual]
gnBaseSpec()	gnBaseSpec	[inline]
gnClone()	gnClone	[inline]
gnMultiSpec()	gnMultiSpec	[inline]
IsCircular() const	gnBaseSpec	[inline, virtual]
IsReverseComplement() const	gnBaseSpec	[inline, virtual]
m_circular	gnBaseSpec	[protected]
m_headerList	gnMultiSpec	[protected]
m_name	gnBaseSpec	[protected]
m_reverseComplement	gnBaseSpec	[protected]
m_sourceName	gnMultiSpec	[protected]
RemoveFeature(const uint32 i)=0	gnMultiSpec	[pure virtual]
RemoveHeader(uint32 i)	gnMultiSpec	[virtual]
RemoveSpec(uint32 i)=0	gnMultiSpec	[pure virtual]
SeqRead(const gnSeqI start, gnSeqC *buf, uint32 &bufLen, const uint32 contigI) const	gnMultiSpec	[virtual]
SetCircular(const boolean value)	gnBaseSpec	[inline, virtual]
SetName(const string &name)	gnBaseSpec	[inline, virtual]
SetReverseComplement(const boolean value)=0	gnBaseSpec	[pure virtual]
SetSourceName(const string &sourceName)	gnMultiSpec	[inline, virtual]
~gnBaseSpec()	gnBaseSpec	[inline, virtual]
~gnClone()	gnClone	[inline, virtual]
~gnMultiSpec()	gnMultiSpec	[inline, virtual]

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