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gnContigSpec Member List

This is the complete list of members for gnContigSpec, including all inherited members.

Clear()	gnContigSpec	[virtual]
Clone() const=0	gnContigSpec	[pure virtual]
CloneRange(const gnSeqI startI, const gnSeqI len) const=0	gnContigSpec	[pure virtual]
CropEnd(gnSeqI cropLen)	gnContigSpec	[virtual]
CropStart(gnSeqI cropLen)	gnContigSpec	[virtual]
GetLength() const	gnContigSpec	[inline, virtual]
GetName() const	gnBaseSpec	[inline, virtual]
GetSourceContigIndex() const	gnContigSpec	[inline, virtual]
GetSourceLength() const=0	gnContigSpec	[pure virtual]
GetSourceName() const	gnContigSpec	[inline, virtual]
GetStart() const	gnContigSpec	[inline, virtual]
gnBaseSpec()	gnBaseSpec	[inline]
gnClone()	gnClone	[inline]
gnContigSpec()	gnContigSpec	[inline]
IsCircular() const	gnBaseSpec	[inline, virtual]
IsReverseComplement() const	gnBaseSpec	[inline, virtual]
m_circular	gnBaseSpec	[protected]
m_length	gnContigSpec	[protected]
m_name	gnBaseSpec	[protected]
m_reverseComplement	gnBaseSpec	[protected]
m_SourceContigIndex	gnContigSpec	[protected]
m_sourceName	gnBaseSpec	[protected]
m_start	gnContigSpec	[protected]
Read(const gnSeqI start, gnSeqC *buf, gnSeqI &bufLen) const=0	gnContigSpec	[protected, pure virtual]
SeqRead(const gnSeqI start, gnSeqC *buf, gnSeqI &bufLen, const uint32 contigI) const	gnContigSpec	[virtual]
SetCircular(const boolean value)	gnBaseSpec	[inline, virtual]
SetLength(const gnSeqI len)	gnContigSpec	[inline, virtual]
SetName(const string &name)	gnBaseSpec	[inline, virtual]
SetReverseComplement(const boolean value)	gnContigSpec	[virtual]
SetSourceContigIndex(const uint32 contigI)	gnContigSpec	[inline, virtual]
SetSourceName(const string &sourceName)	gnContigSpec	[inline, virtual]
SetStart(const gnSeqI start)	gnContigSpec	[inline, virtual]
~gnBaseSpec()	gnBaseSpec	[inline, virtual]
~gnClone()	gnClone	[inline, virtual]
~gnContigSpec()	gnContigSpec	[inline, virtual]

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