| allRegions enum value | gnLocation | |
| Clear() | gnLocation | |
| Clone() const | gnLocation | [virtual] |
| Contains(const gnLocation &l, const intersectRestriction cr=allRegions) const | gnLocation | |
| CropEnd(const gnSeqI end) | gnLocation | |
| CropStart(const gnSeqI start) | gnLocation | |
| CropTo(const gnLocation &l) | gnLocation | |
| Defined | gnLocation | [static] |
| determinedRegions enum value | gnLocation | |
| GetBounds(gnSeqI &s, gnSeqI &sl, gnSeqI &e, gnSeqI &el) const | gnLocation | |
| GetEnd() const | gnLocation | [inline] |
| GetEndLength() const | gnLocation | [inline] |
| GetFirst() const | gnLocation | [inline] |
| GetIntersection(const gnLocation &l, const intersectRestriction ir) const | gnLocation | |
| GetLast() const | gnLocation | [inline] |
| GetStart() const | gnLocation | [inline] |
| GetStartLength() const | gnLocation | [inline] |
| GetType() const | gnLocation | [inline] |
| GetUnion(const gnLocation &l) const | gnLocation | |
| gnClone() | gnClone | [inline] |
| gnLocation() | gnLocation | |
| gnLocation(const gnLocation &s) | gnLocation | |
| gnLocation(const gnSeqI start, const gnSeqI end, const gnLocationType type=LT_Standard, string contigName="") | gnLocation | |
| gnLocation(const gnSeqI start, const gnSeqI startLength, const gnSeqI end, gnSeqI endLength, const gnLocationType type=LT_Standard, string contigName="") | gnLocation | |
| gnLocationType enum name | gnLocation | |
| intersectRestriction enum name | gnLocation | |
| Intersects(const gnLocation &l, const intersectRestriction ir=allRegions) const | gnLocation | |
| IsEndBoundLonger() const | gnLocation | [inline] |
| IsEndBoundShorter() const | gnLocation | [inline] |
| IsStartBoundLonger() const | gnLocation | [inline] |
| IsStartBoundShorter() const | gnLocation | [inline] |
| LT_BetweenBases enum value | gnLocation | |
| LT_Complement enum value | gnLocation | |
| LT_Group enum value | gnLocation | |
| LT_Nothing enum value | gnLocation | |
| LT_OneOf enum value | gnLocation | |
| LT_Order enum value | gnLocation | |
| LT_Standard enum value | gnLocation | |
| m_end | gnLocation | [private] |
| m_endLength | gnLocation | [private] |
| m_name | gnLocation | [private] |
| m_start | gnLocation | [private] |
| m_startLength | gnLocation | [private] |
| m_type | gnLocation | [private] |
| MoveNegative(const gnSeqI diff) | gnLocation | |
| MovePositive(const gnSeqI diff) | gnLocation | |
| MoveTo(const int direction, const gnSeqI diff) | gnLocation | |
| SetBounds(const gnSeqI start, const gnSeqI startLength, const gnSeqI end, const gnSeqI endLength) | gnLocation | |
| SetBounds(const gnSeqI start, const gnSeqI end) | gnLocation | |
| SetEnd(const gnSeqI end) | gnLocation | [inline] |
| SetEnd(const gnSeqI end, const gnSeqI endLength) | gnLocation | [inline] |
| SetEndLength(const gnSeqI endLength) | gnLocation | [inline] |
| SetStart(const gnSeqI start) | gnLocation | [inline] |
| SetStart(const gnSeqI start, const gnSeqI startLength) | gnLocation | [inline] |
| SetStartLength(const gnSeqI startLength) | gnLocation | [inline] |
| SetType(const gnLocationType lt) | gnLocation | [inline] |
| undeterminedRegions enum value | gnLocation | |
| Unknown | gnLocation | [static] |
| ~gnClone() | gnClone | [inline, virtual] |
