outline4.pdf
| Date | Topic | Slides | Notes |
|---|---|---|---|
| Sept. 8 | Trees | lec1.pdf | outline1.pdf
|
| Sept. 10 | Parsimony | lec2.pdf | outline2.pdf
|
| Sept. 15/17 | Molecular Evolution | lec3.pdf | outline3.pdf outline4.pdf
|
| Sept. 22 | Distance Methods | lec5.pdf | outline5.pdf
|
| Sept. 24 | Maximum Likelihood | lec6.pdf | outline6.pdf
|
| Sept. 29 | The Bootstrap | lec7.pdf | outline7.pdf
|
| Oct. 1 | Bayesian Phylogenetics | lec8.pdf |
| Date | Title | Authors | Paper |
|---|---|---|---|
| Sept. 24 | Molecular Evidence for the Origin of Birds | Hedges |
|
| Sept. 29 | The Causes and Consequences of HIV Evolution | Rambaut et al. |
|
| Oct. 1 | Resolution of the Early Placental Mammal Radition Using Bayesian Phylogenetics | Murphy et al. |
|
| Problems | Brief Solutions | Notes |
|---|---|---|
| Assignment #1
| Solution #1
| |
| Assignment #2
| Solution #2
| Exam Notes
|
| Quiz | Brief Solutions |
|---|---|
| Quiz 1 | Solution #1
|
Bret Larget, brlarget@wisc.edu