Date | Topic | Slides | Notes |
---|---|---|---|
Sept. 8 | Trees | lec1.pdf ![]() | outline1.pdf ![]() |
Sept. 13 | Parsimony | [1] ![]() ![]() ![]() | outline2.pdf ![]() |
Sept. 15, 20 | Molecular Evolution | [1] ![]() ![]() ![]() | outline3.pdf ![]() outline4.pdf ![]() |
Sept. 22, 27 | Distance Methods | [1] ![]() ![]() ![]() | outline5.pdf ![]() |
Sept. 29 - Oct. 4 | Maximum Likelihood/Bootstrap | [1] ![]() ![]() ![]() | outline6.pdf ![]() |
Oct. 6 | Bayesian Phylogenetics/MCMC/Quiz2 | [1] ![]() ![]() ![]() |
Problems | Brief Solutions | |
---|---|---|
Assignment #1 ![]() | ||
Assignment #2 ![]() | Solution #2 ![]() | |
Assignment #3 ![]() | Solution #3 ![]() |
Date | Paper | Student |
---|---|---|
Sept. 20 | Davis-PTRSB-2010.pdf ![]() | Daniel Spalink |
Sept. 20 | whales-MPE-2006.pdf ![]() | Stephanie Johnson |
Sept. 27 | Smith-NewPhytologist-2010.pdf ![]() | Frances Goglio |
Sept. 27 | bayes-mammal-Murphy-etal-Science.pdf ![]() | Kristen Lee |
Oct. 4 | Data Analysis (method comparison) | Elizabeth Georgian |
Oct. 4 | Bird Phylogeny Data Analysis (method comparison) Bird Phylogeny Paper ![]() | Fan Huan |
Oct. 4 | HIV Evolution ![]() | Wellington Amaral |
Oct. 4 | Origin of Polar Bears ![]() | Haolin Xu |
Quiz | Brief Solutions |
---|---|
Quiz #1 ![]() | Solution #1 ![]() |
Quiz #2 ![]() | Solution #2 ![]() |
Bret Larget, brlarget@wisc.edu