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Current Research

My current research involves extracting pharmacaphores, which resemble a set of general chemical groups (e.g. hydrophobics, hydrogen donors, etc.) along with their interspatial distances, from biochemically active compounds. This is accomplished using a technique called Inductive Logic Programming(ILP) on a set of pre-determined point-groups that are extracted from the three-dimensional structures of active molecules. Using these point groups with ILP a hypothetical pharmacaphore can be extracted from the molecule that describes the groups and their interspatial distances for an active molecule.

example 4-point pharmacaphore
Example of pharmacaphore overlayed with an active molecule.
Green - Hydrophobic group.
Blue - Positively charged group.
Orange - Hydrogen donor group.

I am also active in the field of proteomics (see Spring 2003 CIBM Seminar).
My other interests include computational chemistry with macromolecular systems and interface instrumentation.


Home Classwork Current Research MSDM IDM PITS SpecPlot Curriculum-Vitae Downloads Fun Stuff Links
Sean McIlwain
Last modified: Mon Aug 11 12:38:33 CDT 2003