For single end: .id cor.with.rsem.loglik 1 X -0.51429710 2 assembly.N25 -0.12001784 3 assembly.N50 -0.16355092 4 assembly.N75 -0.37445712 5 assembly.longest 0.51162208 6 assembly.mean -0.38298133 7 assembly.median -0.47368571 8 assembly.shortest -0.43229236 9 assembly.num.contigs -0.33658181 10 num.oracleset.in.assembly 0.80662155 11 frac.oracleset.in.assembly 0.80662155 12 num.assembly.in.oracleset -0.36611350 13 frac.assembly.in.oracleset -0.28870310 14 num.oracleset.in.assembly.without.check.insdel 0.80662155 15 frac.oracleset.in.assembly.without.check.insdel 0.80662155 16 num.assembly.in.oracleset.without.check.insdel -0.36611350 17 frac.assembly.in.oracleset.without.check.insdel -0.28870310 18 rsem.approx.approx 0.99999759 19 rsem.approx.bic 0.99999238 20 rsem.approx.loglikelihood 0.99999998 21 rsem.approx.loglikelihood.penalty -0.33658414 22 rsem.eval.lognumer.minus.logdenom 0.99999757 23 rsem.eval.logprior -0.34958265 24 rsem.eval.loglikelihood 1.00000000 25 rsem.eval.logdenom -0.33900575 26 rsem.ss.mean.num.reads.per.transcript -0.43716591 27 rsem.ss.median.num.reads.per.transcript -0.45134296 28 rsem.ss.num.transcripts.with.zero.reads 0.09524715 29 rsem.ss.num.matching.bases 0.99855900 30 rsem.ss.num.mismatching.bases 0.61693075 For paired end: .id cor.with.rsem.loglik 1 assembly.N25 0.7207301 2 assembly.N50 0.5519353 3 assembly.N75 0.5915250 4 assembly.longest 0.8143103 5 assembly.mean 0.6284165 6 assembly.median 0.5554863 7 assembly.shortest -0.3505537 8 assembly.num.contigs -0.2223089 9 num.oracleset.in.assembly 0.9997455 10 frac.oracleset.in.assembly 0.9997455 11 num.assembly.in.oracleset -0.4344599 12 frac.assembly.in.oracleset -0.3929896 13 num.oracleset.in.assembly.without.check.insdel 0.9997455 14 frac.oracleset.in.assembly.without.check.insdel 0.9997455 15 num.assembly.in.oracleset.without.check.insdel -0.4372712 16 frac.assembly.in.oracleset.without.check.insdel -0.3980070 17 rsem.approx.approx 1.0000000 18 rsem.approx.bic 1.0000000 19 rsem.approx.loglikelihood 1.0000000 20 rsem.approx.loglikelihood.penalty -0.2223091 21 rsem.eval.lognumer.minus.logdenom 1.0000000 22 rsem.eval.logprior -0.2221733 23 rsem.eval.loglikelihood 1.0000000 24 rsem.eval.logdenom -0.2323937 25 rsem.ss.mean.num.reads.per.transcript 0.0171433 26 rsem.ss.median.num.reads.per.transcript -0.2328762 27 rsem.ss.num.transcripts.with.zero.reads -0.2715588 28 rsem.ss.num.matching.bases 0.9999986 29 rsem.ss.num.mismatching.bases 0.8722262