
## ROLES ".roles" file:

regulator-name	regulatee-name	Activator|Repressor|Dual|Unknown	priority (rest of line is commentary)
regulator-name	regulatee-name	Activator|Repressor|Dual|Unknown	priority (rest of line is commentary)
...
regulator-name	regulatee-name	Activator|Repressor|Dual|Unknown	priority (rest of line is commentary)

## CONDITIONS ".conditions" file:

condition-name possible-values-separated-by-white-space
condition-name possible-values-separated-by-white-space
...
condition-name possible-values-separated-by-white-space

## EXPRESSION ".expression" file:
#
#	header row is gene names
#	each row begins with array ID (name)
#	entries are real numbers
#
#	(see transpose.py to transpose a matrix file)

		gene	gene	gene
array	real	real	real
array	real	real	real
...
array	real	real	real

## CONDITION VALUES ".values" file:
#
#	(also a matrix)
#

		condition	condition	condition
array	value		value		value
array	value		value		value
...
array	value		value		value

## ASSAY DATA ".assay" file:
#
#	Combination of expression and condition values
#
#	N:  number of arrays
#	C:	number of conditions (always first in the header row)
#	G:	number of genes
#
N C G
		condition	condition	... condition	gene	gene	... gene
array	value		value		...	value		real	real	...	real
array	value		value		...	value		real	real	...	real
...
array	value		value		...	value		real	real	...	real


