Neuroscience Databases: A Practical Guide is the first book providing a comprehensive overview of these increasingly important databases. This volume makes the results of the Human Genome Project and other recent large-scale initiatives in the neurosciences available to a wider community. It extends the scope of bioinformatics from the molecular to the cellular, microcircuitry and systems levels, dealing for the first time with complex neuroscientific issues and leading the way to a new culture of data sharing and data mining necessary to successfully tackle neuroscience questions.
Aimed at the novice user who wants to access the data, it provides clear and concise instructions on how to download the available data sets and how to use the software with a minimum of technical detail with most chapters written by the database creators themselves.
Key databases and topics include:
-Neuroinformatics for C. Elegans;
-Gene Expression Patterns;
-Functional Analyses of Olfactory Receptors
-Protein-Protein Interactions;
-Web-Based Neuronal Archives;
-Neuronal and Network Modeling;
-Storage and Retrieval of Experimental Data for Biophysically Realistic Modeling;
-Analysis of Spike Trains;
-Neural Connectivity Patterns;
-Software Tools for Neuroimaging;
-Data Management, Inspection and Sharing.
Rolf Kötter is a staff member at the Dept. of Anatomy II and Leader of the Computational Systems Neuroscience Group at the C. & O. Vogt Brain Research Institute, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.
Neuroinformatics for C. elegans: Relating Mind and Body in Wormbase
1
2
A Gene Expression Map of the Mouse Brain. Genepaint.org - A Database of Gene Expression Patterns
19
3
Databases for the Functional Analyses of Olfactory Receptors
37
4
Construction of a Protein-Protein Interaction Database (PPID) for Synaptic Biology
51
5
Modeling the Dynamics of Second Messenger Pathways
63
6
Web-Based Neuronal Archives. Neuronal Morphometric and Electrotonic Analysis
81
7
ModelDB: A Resource for Neuronal and Network Modeling
99
8
CoCoDat: Collation of Cortical Data on Neurons and Microcircuitry. Systematic Storage and Retrieval of Experimental Data for Biophysically Realistic Modeling
111
9
Computer Models and Analysis Tools for Neural Microcircuits
123
10
A Practical Guide to Information Analysis of Spike Trains
139
11
An Introduction to CoCoMac-Online. The Online-Interface of the Primate Connectivity Database CoCoMac
155
12
Graph Theory Methods for the Analysis of Neural Connectivity Patterns
171
13
The PUPS-MOSIX Environment: A Homeostatic Environment for Neuro- and Bio-informatic Applications
187
14
The NeuroHomology Database: An Online-KMS for Handling and Evaluation of the Neurobiological Information
203
15
The fMRI Data Center: Software Tools for Neuroimaging Data Management, Inspection, and Sharing
16
Statistical Parametric Mapping
237
17
The Brain Positioning Software
251
18
BrainInfo. An Online Interactive Brain Atlas and Nomenclature
259
19
Federation of Brain Data through Knowledge-guided Mediation
275
20
Facilitating Data and Software Sharing in the Neurosciences - A Neuroinformatics Portal
More About This Textbook
Overview
Neuroscience Databases: A Practical Guide is the first book providing a comprehensive overview of these increasingly important databases. This volume makes the results of the Human Genome Project and other recent large-scale initiatives in the neurosciences available to a wider community. It extends the scope of bioinformatics from the molecular to the cellular, microcircuitry and systems levels, dealing for the first time with complex neuroscientific issues and leading the way to a new culture of data sharing and data mining necessary to successfully tackle neuroscience questions.
Aimed at the novice user who wants to access the data, it provides clear and concise instructions on how to download the available data sets and how to use the software with a minimum of technical detail with most chapters written by the database creators themselves.
Key databases and topics include:
-Neuroinformatics for C. Elegans;
-Gene Expression Patterns;
-Functional Analyses of Olfactory Receptors
-Protein-Protein Interactions;
-Web-Based Neuronal Archives;
-Neuronal and Network Modeling;
-Storage and Retrieval of Experimental Data for Biophysically Realistic Modeling;
-Analysis of Spike Trains;
-Neural Connectivity Patterns;
-Software Tools for Neuroimaging;
-Data Management, Inspection and Sharing.
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Meet the Author
Rolf Kötter is a staff member at the Dept. of Anatomy II and Leader of the Computational Systems Neuroscience Group at the C. & O. Vogt Brain Research Institute, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.
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