Workflow Platforms for Systems Genetics
- eQTL Viewer
- Mouse Genome Informatics:
Phenotypes, Alleles & Disease Models
- PhenoGen Informatics (CO U)
- eXtensible Genotype And Phenotype platform (XGAP)
- MOLGENIS & MetaNetwork, Swertz & Jansen, U Groningen
- Weighted Gene Co-expression Network Analysis (WGCNA), Horvath, UCLA
- iPlant
- Sage Bionetworks Repository: Synapse
- GenomeSpace
- Institute for Systems Biology
- Scaling in Random Networks, Barabasi
- BioMart
& R/biomaRt
- BioGRID: Biological General Repository for Interaction Datasets
- Molecular Libraries Program
- KEGG: Kyoto Encyclopedia of Genes and Genomes
- Gene Ontology (GO)
& R/gostats
- NIH Mouse Knockout Project: IKMC |
KOMP
- Rat Genome Database:
Knockout Rat Consortium
- AgriKOLA: Arabidopsis Genomic RNAi Knock-out Line Analysis
- Institute of Bioinformatics and Systems Biology/MIPS:
Mammalian PPI Database
& Yeast PPI (CYGD)
- Finley Lab Links to PPI Databases
- PPI Databases, Data Collections, & Webtools
- Center for Cancer Systems Biology Links, Harvard U
- Transfac: Gene Regulation
- JASPAR Database
- Arabidopsis Database (AtTFDB)
- LIMS.com: education on LIMS deployment
- StarLIMS
- Online Mouse Info System (mLIMS)
- LabKey
- UW-Madison Diabetes System
- RStudio
- Data-Intensive Science
think-piece from Data-Enabled Life Science Research (DELSA)
- Cloud Computing (Wikipedia)
- Grid Computing (Wikipedia: see list of national projects
- Open Science Grid
- Condor Project
& Center for High Throughput Computing, UW-Madison
- IEEE High Performance Computing Conference
- NVIDIA High Performance Computing
- Simulation Based Engineering Lab, UW-Madison
- Algorithms, Machines, People (AMP Lab, UC-Berkeley)
- BIGDATA: White House Initiative
Return to SISG Systems Genetics for Experimental Crosses
Brian Yandell