From crittend@itis.com Tue Jan 11 16:45:59 2000 Date: Tue, 11 Jan 2000 10:47:38 -0600 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: Mapping References, January, 2000 Resent-Date: Tue, 11 Jan 2000 10:47:38 -0600 Resent-From: angenmap@genome.ansci.iastate.edu ************************************************************************* AnGenMap Discussion Mailing List | Mail distributed to >600 members http://www.genome.iastate.edu/community/discuss.html ************************************************************************* JOURNAL REFS. (MAPPING METHODS AND REVIEWS) PM 1/2000 1. Thinking postgenomics [editorial]. Nat Genet. 23:375-6, 1999. Medline UID: 20047753 2. Barlati, S.; Zoppi, N.; Copeta, A.; Tavian, D.; De Petro, G.Colombi, M. Quantitative in situ hybridization for the evaluation of gene expression in asynchronous and synchronized cell cultures and in tissue sections. Histol Histopathol. 14:1231-40, 1999. ADDRESS: Department of Biomedical Sciences and Biotechnology, University of Brescia, Medical Faculty, Italy. barlati@med.unibs.it. Medline UID: 99436827 3. Besemer, J. and Borodovsky, M. Heuristic approach to deriving models for gene finding. Nucleic Acids Res. 27:3911-20, 1999. ADDRESS: School of Biology, Georgia Institute of Technology, Atlanta, GA 30332- 0230, USA. Medline UID: 99412435 4. Breen, G.; Sham, P.; Li, T.; Shaw, D.; Collier, D. A.St Clair, D. Accuracy and sensitivity of DNA pooling with microsatellite repeats using capillary electrophoresis. Mol Cell Probes. 13:359-65, 1999. ADDRESS: Dept. of Mental Health, Medical School, University of Aberdeen, UK. Medline UID: 99439788 5. Burt, D. W.; Bruley, C.; Dunn, I. C.; Jones, C. T.; Ramage, A.; Law, A. S.; Morrice, D. R.; Paton, I. R.; Smith, J.; Windsor, D.; Sazanov, A.; Fries, R.Waddington, D. The dynamics of chromosome evolution in birds and mammals. Nature. 402:411-3, 1999. ADDRESS: Roslin Institute (Edinburgh), Roslin, Midlothian, UK. Dave- Burt@bbsrc.ac.uk. Medline UID: 20052163 6. Childs, G. V. In situ hybridization with nonradioactive probes. Methods Mol Biol. 123:131-41, 2000. ADDRESS: Department of Anatomy and Neurosciences, University of Texas Medical Branch, Galveston, USA. Medline UID: 20015489 7. deJong, G.; Telenius, A. H.; Telenius, H.; Perez, C. F.; Drayer, J. I.Hadlaczky, G. Mammalian artificial chromosome pilot production facility: large-scale isolation of functional satellite DNA-based artificial chromosomes. Cytometry. 35:129-33, 1999. ADDRESS: Chromos Molecular Systems, Inc., Vancouver, British Columbia, Canada. gdejong@chromos.com. Medline UID: 20019596 8. Dolan, C. V.; Boomsma, D. I.Neale, M. C. A note on the power provided by sibships of sizes 2, 3, and 4 in genetic covariance modeling of a codominant QTL. Behav Genet. 29:163-70, 1999. ADDRESS: Department of Psychology, University of Amsterdam, The Netherlands. op_dolan@macmail.psy.uva.nl. Medline UID: 20015645 9. Fan, Z. H.; Mangru, S.; Granzow, R.; Heaney, P.; Ho, W.; Dong, Q.Kumar, R. Dynamic DNA hybridization on a chip using paramagnetic beads. Anal Chem. 71:4851-9, 1999. ADDRESS: Sarnoff Corporation, Princeton, New Jersey 08543, USA. zfan@sarnoff.com. Medline UID: 20030514 10. Hamilton, E. P. and Orias, E. Genetically mapping new mutants and cloned genes. Methods Cell Biol. 62:265-80, 2000. ADDRESS: Department of Molecular, Cellular and Developmental Biology, University of California at Santa Barbara 93106, USA. Medline UID: 99432815 11. Heng, H. H. Released chromatin or DNA fiber preparations for high-resolution fiber FISH. Methods Mol Biol. 123:69-81, 2000. ADDRESS: Center for Molecular Medicine and Genetics, School of Medicine, Wayne State University, Detroit, MI, USA. Medline UID: 20015485 12. Herrick, J. and Bensimon, A. Imaging of single DNA molecule: applications to high-resolution genomic studies. Chromosome Res. 7:409-23, 1999. ADDRESS: Departement des Biotechnologies, Institut Pasteur, Paris, France. Medline UID: 20023620 13. Himmelbauer, H.; Schalkwyk, L. C.Lehrach, H. Interspersed repetitive sequence (IRS)-PCR for typing of whole genome radiation hybrid panels. Nucleic Acids Res. 28:e7, 2000. ADDRESS: Max-Planck-Institute of Molecular Genetics, Ihnestrasse 73, D-14195 Berlin-Dahlem, Germany. himmelbauer@molgen.mpg.de. Medline UID: 20075328 14. Ivashuta, S.; Imai, R.; Uchiyama, K.Gau, M. The coupling of differential display and AFLP approaches for nonradioactive mRNA fingerprinting. Mol Biotechnol. 12:137-41, 1999. ADDRESS: Hokkaido National Agricultural Experiment Station, Sapporo, Japan. sergey@cryo.affrc.go.jp. Medline UID: 20064167 15. Kuklin, A.; Munson, K.; Taylor, P.Gjerde, D. Isolation and analysis of amplified cDNA fragments during detection of unknown polymorphisms with temperature modulated heteroduplex chromatography. Mol Biotechnol. 11:257-61, 1999. ADDRESS: Transgenomic, Inc., San Jose, CA 95131, USA. Medline UID: 99432860 16. Kwok, P. Y. and Gu, Z. Single nucleotide polymorphism libraries: why and how are we building them? Mol Med Today. 5:538-43, 1999. ADDRESS: Division of Dermatology, Washington University School of Medicine, 660 S. Euclid Ave, Box 8123, St. Louis, MS 63110, USA. kwok@im.wustl.edu. Medline UID: 20032094 17. Ladjali-Mohammedi, K.; Bitgood, J. J.; Tixier-Boichard, M.Ponce De Leon, F. A. International system for standardized avian karyotypes (ISSAK): standardized banded karyotypes of the domestic fowl (Gallus domesticus). Cytogenet Cell Genet. 86:271-6, 1999. ADDRESS: Laboratoire de Genetique Factorielle, INRA Jouy-en-Josas, France. Medline UID: 20044625 18. Le Moine, C. Quantitative in situ hybridization using radioactive probes to study gene expression in heterocellular systems. Methods Mol Biol. 123:143-56, 2000. ADDRESS: CNRS UMR 5541, Laboratoire d'Histologie-Embryologie, Universite Victor Segalen Bordeaux II, France. Medline UID: 20015490 19. Li, J.; Wang, F.; Zabarovska, V.; Wahlestedt, C.Zabarovsky, E. R. Cloning of polymorphisms (COP): enrichment of polymorphic sequences from complex genomes. Nucleic Acids Res. 28:e1, 2000. ADDRESS: Center for Genomics Research, Karolinska Institute, 171 77 Stockholm, Sweden. Medline UID: 20075322 20. Marth, G. T.; Korf, I.; Yandell, M. D.; Yeh, R. T.; Gu, Z.; Zakeri, H.; Stitziel, N. O.; Hillier, L.; Kwok, P. Y.Gish, W. R. A general approach to single-nucleotide polymorphism discovery. Nat Genet. 23:452-6, 1999. ADDRESS: Washington University Department of Genetics and Genome Sequencing Center, St. Louis, Missouri, USA. gmarth@watson.wustl.edu java/Propub/genetics/ng1299_452.fulltext java/Propub/genetics/ng1299_452.abstract. Medline UID: 20047776 21. Olson, J. M.; Witte, J. S.Elston, R. C. Genetic mapping of complex traits. Stat Med. 18:2961-81, 1999. ADDRESS: Department of Epidemiology and Biostatistics, Rammelkamp Center for Education and Research, MetroHealth Campus, Case Western Reserve University, Cleveland, Ohio 44109, USA. olson@darwin.cwru.edu. Medline UID: 99455054 22. Passarge, E.; Horsthemke, B.Farber, R. A. Incorrect use of the term synteny [letter].23:387, 1999. Medline UID: 20071911 23. Perez-Enciso, M. and Toro, M. A. Robust QTL effect estimation using the minimum distance method. Heredity. 83 ( Pt 3):347-53, 1999. ADDRESS: Area de Produccio Animal, Centre UdL-IRTA, 25198 Lleida, Spain. miguel.perez@irta.es. Medline UID: 99436029 24. Reineke, A.; Karlovsky, P.Zebitz, C. P. Suppression of randomly primed polymerase chain reaction products (random amplified polymorphic DNA) in heterozygous diploids. Mol Ecol. 8:1449-55, 1999. ADDRESS: University of Hohenheim, Institute of Phytomedicine, Stuttgart, Germany. areineke@waite.adelaide.edu.au. Medline UID: 20032236 25. Sasinowska, H. and Sasinowski, M. An algorithm for the assembly of robust physical maps based on a combination of multi-level hybridization data and fingerprinting data. Comput Chem. 23:251-62, 1999. ADDRESS: Department of Mathematical Sciences, Clemson University, Clemson, SC 29634, USA. heather@math.clemson.edu. Medline UID: 20089917 26. Saunders, R. D. In situ hybridization to polytene chromosomes. Methods Mol Biol. 123:103-13, 2000. ADDRESS: Department of Anatomy and Physiology, Old Medical School, University of Dundee, Scotland. Medline UID: 20015487 27. Smith, J. M. The detection and measurement of recombination from sequence data. Genetics. 153:1021-7, 1999. ADDRESS: School of Biological Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom. Medline UID: 99442401 28. Smith, M. D.; Parker, A.; Wikaningrum, R.Coleman, M. Combined immunohistochemical labeling and in situ hybridization to colocalize mRNA and protein in tissue sections. Methods Mol Biol. 123:165-75, 2000. ADDRESS: Repatriation General Hospital, Rheumatology Research Unit, Daw Park, Australia. Medline UID: 20015492 29. Speel, E. J.; Hopman, A. H.Komminoth, P. Signal amplification for DNA and mRNA. Methods Mol Biol. 123:195-216, 2000. ADDRESS: Department of Pathology, University Hospital Zurich, Switzerland. Medline UID: 20015494 30. van den Oord, E. J. Method to detect genotype-environment interactions for quantitative trait loci in association studies. Am J Epidemiol. 150:1179-87, 1999. ADDRESS: Institute of Psychiatry, London, England. Medline UID: 20053299 31. Waller, R. F. and McFadden, G. I. In situ hybridization for electron microscopy. Methods Mol Biol. 123:259-77, 2000. ADDRESS: Department of Botany, University of Melbourne, Parkville, Victoria, Australia. Medline UID: 20015497 32. Webb, G. C. Radioactive in situ hybridization to animal chromosomes. Methods Mol Biol. 123:29-50, 2000. ADDRESS: Department of Obstetrics and Gynaecology, Queen Elizabeth Hospital, Woodville, Australia. Medline UID: 20015483 33. Wooley, J. C. Trends in computational biology: a summary based on a RECOMB plenary lecture, 1999. J Comput Biol. 6:459-74, 1999. ADDRESS: University of California San Diego, La Jolla 92093-0505, USA. jwooley@ucsd.edu. Medline UID: 20047404 34. Woolliams, J. A.; Bijma, P.Villanueva, B. Expected genetic contributions and their impact on gene flow and genetic gain. Genetics. 153:1009-20, 1999. ADDRESS: Roslin Institute, Roslin, Midlothian EH25 9PS, United Kingdom. john.woolliams@bbsrc.ac.uk. Medline UID: 99442400 35. Wright, A. F.; Carothers, A. D.Pirastu, M. Population choice in mapping genes for complex diseases. Nat Genet. 23:397-404, 1999. ADDRESS: MRC Human Genetics Unit, Western General Hospital, Crewe Road, Edinburgh, UK. alan.wright@hgu.mrc.ac.uk. Medline UID: 20047766 36. Yi, N. and Xu, S. A random model approach to mapping quantitative trait loci for complex binary traits in outbred populations. Genetics. 153:1029-40, 1999. ADDRESS: Department of Botany, University of California, Riverside, California 92521, USA. Medline UID: 99442402 37. Zhao, H.; Merikangas, K. R.Kidd, K. K. On a randomization procedure in linkage analysis. Am J Hum Genet. 65:1449-56, 1999. ADDRESS: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT, USA. hongyu.zhao@yale.edu. Medline UID: 99452608 ****************** Lyman/Margaret Crittenden Phone: 608-798-0791 8550 Highway 19 e-mail: crittend@itis.com Cross Plains, WI 53528-9300 USA ****************** +--------------------------------------+--------------------------------+ | U.S. PIG GENOME COORDINATION PROJECT | Paid for by funds from the | | WEB: http://www.genome.iastate.edu | NRSP8 USDA /CSREES sponsored | | LIST: angenmap@db.genome.iastate.edu | PigGenome Coordination Program | +--------------------------------------+--------------------------------+