From crittend@itis.com Thu Feb 17 16:59:27 2000 Date: Thu, 17 Feb 2000 11:56:12 -0600 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: February, 2000 Mapping References Resent-Date: Thu, 17 Feb 2000 11:56:12 -0600 Resent-From: angenmap@genome.ansci.iastate.edu ************************************************************************* AnGenMap Discussion Mailing List | Mail distributed to >600 members http://www.genome.iastate.edu/community/discuss.html ************************************************************************* JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 2/00 1. Alarcon, M.; Wang, Y.; Rotter, J. I.Yang, H. Genetic linkage analysis of simulated complex disease data. Genet Epidemiol. 17 Suppl 1:S461-6, 1999. ADDRESS: Department of Pediatrics, Steven Spielberg Pediatric Research=20 Center, Burns and Allen Research Institute, Cedars-Sinai Medical Center,=20 Los Angeles, California, USA. Medline UID: 20065344 2. Alcais, A.; Philippi, A.Abel, L. Genetic model-free linkage analysis using the maximum-likelihood-binomial=20 method for categorical traits. Genet Epidemiol. 17 Suppl 1:S467-72, 1999. ADDRESS: INSERM U436, Hopital Pitie-Salpetriere, Paris, France. Medline UID: 20065345 3. Almasy, L.; Williams, J. T.; Dyer, T. D.Blangero, J. Quantitative trait locus detection using combined linkage/disequilibrium=20 analysis. Genet Epidemiol. 17 Suppl 1:S31-6, 1999. ADDRESS: Department of Genetics, Southwest Foundation for Biomedical=20 Research, San Antonio, Texas 78245-0549, USA. Medline UID: 20065276 4. Anderson, J. L.; Hauser, E. R.; Martin, E. R.; Scott, W. K.;=20 Ashley-Koch, A.; Kim, K. J.; Monks, S. A.; Haynes, C. S.; Speer, M.=20 C.Pericak-Vance, M. A. Complete genomic screen for disease susceptibility loci in nuclear families. Genet Epidemiol. 17 Suppl 1:S473-8, 1999. ADDRESS: Center for Human Genetics, Duke University Medical Center, Durham,= =20 North Carolina 27707, USA. Medline UID: 20065346 5. Babron, M. C.; Barillot, E.; Margaritte-Jeannin, P.Clerget-Darpoux, F. Strategies for detecting susceptibility genes in a complex disease. Genet Epidemiol. 17 Suppl 1:S479-83, 1999. ADDRESS: Genetic Epidemiology Unit, INSERM U155, Paris, France. Medline UID: 20065347 6. Badner, J. A. and Goldin, L. R. Meta-analysis of linkage studies. Genet Epidemiol. 17 Suppl 1:S485-90, 1999. ADDRESS: National Institute of Mental Health, National Institutes of=20 Health, Bethesda, Maryland, USA. Medline UID: 20065348 7. Batzoglou, S.; Berger, B.; Mesirov, J.Lander, E. S. Sequencing a genome by walking with clone-end sequences: a mathematical=20 analysis. Genome Res. 9:1163-74, 1999. ADDRESS: Laboratory for Computer Science, Massachusetts Institute of=20 Technology, Cambridge, Massachusetts 02139 USA. Medline UID: 20082962 8. Bhat, A.; Lucek, P. R.Ott, J. Analysis of complex traits using neural networks. Genet Epidemiol. 17 Suppl 1:S503-7, 1999. ADDRESS: Laboratory of Statistical Genetics, Rockefeller University, New=20 York, New York, USA. Medline UID: 20065351 9. Bull, S. B.; Toma, C.Mirea, L. Disease-marker associations: power and heterogeneity in independent=20 population samples. Genet Epidemiol. 17 Suppl 1:S509-14, 1999. ADDRESS: Samuel Lunenfeld Research Institute of Mount Sinai Hospital,=20 Toronto, Canada. Medline UID: 20065352 10. Caetano, A. R.; Shiue, Y. L.; Lyons, L. A.; O'Brien, S. J.; Laughlin,= =20 T. F.; Bowling, A. T.Murray, J. D. A comparative gene map of the horse (Equus caballus). Genome Res. 9:1239-49, 1999. ADDRESS: Veterinary Genetics Laboratory, University of California Davis,=20 Davis, California 95616-8744, USA. Medline UID: 20082971 11. Casas, E.; Barendse, W.; Beever, J. E.; Burns, B. M.; Davis, S. K.;=20 Erhardt, G.; Forster, M.; Gomez-Raya, L.; Kalm, E.; Kappes, S. M.;=20 Klungland, H.; Lewin, H. A.; Lien, S.; Olsaker, I.; Reinsch, N.; Schwerin,= =20 M.; Song, Y.; Taylor, J. F.; Thomsen, H.; Vage, D. I.; Wu, X.; Xu, N.Yeh, C.= C. Bovine chromosome 4 workshop: consensus and comprehensive linkage maps. Anim Genet. 30:375-7, 1999. ADDRESS: USDA-ARS, Clay Center, NE 68933-0166, USA.= casas@email.marc.usda.gov. Medline UID: 20048996 12. Collins, A. Mapping disease genes using the Malecot model for allelic association and=20 the beta model for linkage. Clin Exp Allergy. 29 Suppl 4:53-6, 1999. ADDRESS: Human Genetics, University of Southampton, UK. Medline UID: 20104534 13. Collins, A.; Lonjou, C.Morton, N. E. Genetic epidemiology of single-nucleotide polymorphisms. Proc Natl Acad Sci U S A. 96:15173-7, 1999. ADDRESS: Human Genetics, University of Southampton, Southampton General=20 Hospital, Tremona Road, Southampton SO16 6YD, United Kingdom. Medline UID: 20079626 14. Commenges, D. and Beurton-Aimar, M. Multipoint linkage analysis using the weighted-pairwise correlation= statistic. Genet Epidemiol. 17 Suppl 1:S515-9, 1999. ADDRESS: INSERM U330, Universite de Bordeaux II, France. Medline UID: 20065353 15. Cordell, H. J.; Jacobs, K. B.; Wedig, G. C.Elston, R. C. Improving the power for disease locus detection in affected-sib-pair=20 studies by using two-locus analysis and multiple regression methods. Genet Epidemiol. 17 Suppl 1:S521-6, 1999. ADDRESS: Department of Epidemiology and Biostatistics, Case Western Reserve= =20 University, Cleveland, Ohio, USA. Medline UID: 20065354 16. Daw, E. W.; Kumm, J.; Snow, G. L.; Thompson, E. A.Wijsman, E. M. Monte Carlo Markov chain methods for genome screening. Genet Epidemiol. 17 Suppl 1:S133-8, 1999. ADDRESS: Division of Medical Genetics, University of Washington, Seattle=20 98195, USA. Medline UID: 20065293 17. Ehm, M. G.; Karnoub, M. C.St Jean, P. Search for susceptibility genes, gene x gene interactions, and gene x=20 environment interactions utilizing nonparametric linkage analysis. Genet Epidemiol. 17 Suppl 1:S539-43, 1999. ADDRESS: Bioinformatics Department, Glaxo Wellcome Inc., Research Triangle= =20 Park, NC 27709, USA. Medline UID: 20065357 18. Eichenbaum-Voline, S.; Baur, M. P.Knapp, M. Genetic analysis of a complex disease in the presence of an environmental=20 risk factor. Genet Epidemiol. 17 Suppl 1:S545-50, 1999. ADDRESS: Institute for Medical Statistics, University of Bonn, Germany. Medline UID: 20065358 19. Falk, C. T. Systematic search for disease loci for complex genetic traits: a study=20 based on simulated population data. Genet Epidemiol. 17 Suppl 1:S551-6, 1999. ADDRESS: Lindsley F. Kimball Research Institute, New York Blood Center, New= =20 York 10021, USA. Medline UID: 20065359 20. Garcia, M. E. and Haines, J. L. Hunting genetic diseases: exploring a multistage approach to identifying=20 disease loci. Genet Epidemiol. 17 Suppl 1:S557-62, 1999. ADDRESS: Program in Human Genetics, Vanderbilt University Medical Center,=20 Nashville, TN 37232, USA. Medline UID: 20065360 21. Gauderman, W. J.; Morrison, J. L.; Siegmund, K. D.Thomas, D. C. A joint test of linkage and gene x environment interaction, with affected=20 sib pairs. Genet Epidemiol. 17 Suppl 1:S563-8, 1999. ADDRESS: Department of Preventive Medicine, University of Southern=20 California, Los Angeles 90033, USA. Medline UID: 20065361 22. Genin, E.; Guyon, F.; Margaritte-Jeannin, P.; Quesneville,=20 H.Clerget-Darpoux, F. Detection and modeling of disease susceptibility locus effects: how much=20 can be learned from contrast of populations? Genet Epidemiol. 17 Suppl 1:S569-74, 1999. ADDRESS: HEXAGEN, Cambridge, UK. Medline UID: 20065362 23. Georges, M. Towards marker assisted selection in livestock. Reprod Nutr Dev. 39:555-61, 1999. ADDRESS: Department of Genetics, Faculty of Veterinary Medicine, University= =20 of Liege, Belgium. michel.georges@ulg.ac.be. Medline UID: 20084183 24. Goddard, K. A.; Goode, E. L.; Rozek, L. S.Jarvik, G. P. Impact of family structure on the power of linkage tests using sib-pair=20 methods. Genet Epidemiol. 17 Suppl 1:S575-9, 1999. ADDRESS: Department of Biostatistics, University of Washington, Seattle,= USA. Medline UID: 20065363 25. Goldstein, D. R.; Sain, S. R.; Guerra, R.Etzel, C. J. Meta-analysis by combining parameter estimates: simulated linkage studies. Genet Epidemiol. 17 Suppl 1:S581-6, 1999. ADDRESS: Department of Statistics, University of California, Los Angeles=20 90024, USA. Medline UID: 20065364 26. Greenwood, C. M.; Brewer, C. G.Morgan, K. Validation of linkage by sampling based on environmental exposures. Genet Epidemiol. 17 Suppl 1:S593-8, 1999. ADDRESS: Department of Human Genetics, McGill University, Montreal, Quebec,= =20 Canada. Medline UID: 20065366 27. Gu, C.; Province, M.Rao, D. C. Meta-analysis of genetic linkage to quantitative trait loci with=20 study-specific covariates: a mixed-effects model. Genet Epidemiol. 17 Suppl 1:S599-604, 1999. ADDRESS: Division of Biostatistics, Washington University School of=20 Medicine, St. Louis, MO 63110, USA. Medline UID: 20065367 28. Guerin, G.; Bailey, E.; Bernoco, D.; Anderson, I.; Antczak, D. F.;=20 Bell, K.; Binns, M. M.; Bowling, A. T.; Brandon, R.; Cholewinski, G.;=20 Cothran, E. G.; Ellegren, H.; Forster, M.; Godard, S.; Horin, P.; Ketchum,= =20 M.; Lindgren, G.; McPartlan, H.; Meriaux, J. C.; Mickelson, J. R.; Millon,= =20 L. V.; Murray, J.; Neau, A.; Roed, K.; Ziegle, J.^=7Fy=80=7F=062. Report of the International Equine Gene Mapping Workshop: male linkage map. Anim Genet. 30:341-54, 1999. ADDRESS: INRA Centre de Recherches de Jouy, Jouy-en-Josas, France. Medline UID: 20048992 29. Guerra, R.; Etzel, C. J.; Goldstein, D. R.Sain, S. R. Meta-analysis by combining p-values: simulated linkage studies. Genet Epidemiol. 17 Suppl 1:S605-9, 1999. ADDRESS: Department of Statistical Science, Southern Methodist University,= =20 Dallas, TX 75275, USA. Medline UID: 20065368 30. He, Q.; Nemesure, B. B.Mendell, N. R. Performance of the nonparametric linkage analysis using GENEHUNTER for a=20 complicated genetic disease. Genet Epidemiol. 17 Suppl 1:S611-4, 1999. ADDRESS: Department of Preventive Medicine, State University of New York at= =20 Stony Brook, USA. Medline UID: 20065369 31. Hinrichs, A.; Lin, J. H.; Reich, T.; Bierut, L.Suarez, B. K. Markov chain Monte Carlo linkage analysis of a complex qualitative= phenotype. Genet Epidemiol. 17 Suppl 1:S615-20, 1999. ADDRESS: Department of Psychiatry, Washington University School of=20 Medicine, St. Louis, MO 63110, USA. Medline UID: 20065370 32. Hsu, L.; Aragaki, C.; Quiaoit, F.; Wang, X.; Xu, X.Zhao, L. P. A genome-wide scan for a simulated data set using two newly developed= methods. Genet Epidemiol. 17 Suppl 1:S621-6, 1999. ADDRESS: Division of Public Health Sciences, Fred Hutchinson Cancer=20 Research Center, Seattle, WA 98109, USA. Medline UID: 20065371 33. Huang, J. and Jiang, Y. Linkage detection adaptive to linkage disequilibrium: the disequilibrium=20 maximum-likelihood-binomial test for affected-sibship data. Am J Hum Genet. 65:1741-59, 1999. ADDRESS: Department of Statistics and Actuarial Science, University of=20 Iowa, Iowa City, IA 52242, USA. jian-huang@uiowa.edu. Medline UID: 20046910 34. Kadkol, S. S.; Gage, W. R.Pasternack, G. R. In situ hybridization-theory and practice. Mol Diagn. 4:169-83, 1999. ADDRESS: Department of Pathology, Division of Molecular Pathology, The=20 Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. Medline UID: 20022011 35. Kawamoto, S.; Ohnishi, T.; Kita, H.; Chisaka, O.Okubo, K. Expression profiling by iAFLP: A PCR-based method for genome-wide gene=20 expression profiling. Genome Res. 9:1305-12, 1999. ADDRESS: Institute for Molecular and Cellular Biology, Osaka University,=20 1-3, Yamada-oka, Suita, Osaka 565 Japan. Medline UID: 20082977 36. Lin, J. H.; Hinrichs, A.; Liu, K. Y.; Bierut, L.Suarez, B. K. Genetic dissection of a complex trait. Genet Epidemiol. 17 Suppl 1:S633-8, 1999. ADDRESS: Division of Biostatistics, Washington University School of=20 Medicine, St. Louis, MO 63110, USA. Medline UID: 20065373 37. Liu, Y.; Mirea, L.; Pinnaduwage, D.; Fallah, S.Tritchler, D. A comparison of some allele-sharing based linkage analysis methods for=20 detecting complex trait loci. Genet Epidemiol. 17 Suppl 1:S639-42, 1999. ADDRESS: Department of Public Health Sciences, University of Toronto,=20 Ontario, Canada. Medline UID: 20065374 38. Loesgen, S.; Scholz, M.; Schmidt, S.Bickeboller, H. Incorporating larger families in identity-by-descent based linkage analysis. Genet Epidemiol. 17 Suppl 1:S235-40, 1999. ADDRESS: Institute for Medical Statistics and Epidemiology, Technische=20 Universitat Munchen, Germany. Medline UID: 20065310 39. Mandal, D. M.; Sorant, A. J.; Pugh, E. W.; Marcus, S. E.; Klein, A.=20 P.; Mathias, R. A.; O'Neill, J.; Temiyakarn, L. F.; Wilson, A.=20 F.Bailey-Wilson, J. E. Environmental covariates: effects on the power of sib-pair linkage methods. Genet Epidemiol. 17 Suppl 1:S643-8, 1999. ADDRESS: Department of Medicine, Louisiana State University Medical Center,= =20 New Orleans, USA. Medline UID: 20065375 40. Marinov, M.; Matise, T. C.; Lathrop, G. M.Weeks, D. E. A comparison of two algorithms, MultiMap and gene mapping system, for=20 automated construction of genetic linkage maps. Genet Epidemiol. 17 Suppl 1:S649-54, 1999. ADDRESS: Department of Human Genetics, University of Pittsburgh, PA 15261,= USA. Medline UID: 20065376 41. Monks, S. A.; Martin, E. R.; Umbach, D. M.Kaplan, N. L. Two tests of association for a susceptibility locus for families of=20 variable size: an example using two sampling strategies. Genet Epidemiol. 17 Suppl 1:S655-60, 1999. ADDRESS: Department of Statistics, North Carolina State University,=20 Raleigh, USA. Medline UID: 20065377 42. Morris, A. and Whittaker, J. Generalization of the extended transmission disequilibrium test to two=20 unlinked disease loci. Genet Epidemiol. 17 Suppl 1:S661-6, 1999. ADDRESS: Department of Applied Statistics, University of Reading, United=20 Kingdom. Medline UID: 20065378 43. Nemesure, B. B.; He, Q.Mendell, N. R. A normalized identity-by-state statistic for linkage analysis of sib pairs. Genet Epidemiol. 17 Suppl 1:S673-7, 1999. ADDRESS: Department of Preventive Medicine, State University of New York at= =20 Stony Brook, New York, USA. Medline UID: 20065380 44. Nicolaou, M.; Premkumar, S.; DeStefano, A. L.; Farrer, L. A.Cupples,= =20 L. A. Power of concordant versus discordant sib pairs at different penetrance= levels. Genet Epidemiol. 17 Suppl 1:S679-84, 1999. ADDRESS: Department of Medicine, Boston University, Massachusetts, USA. Medline UID: 20065381 45. Olson, J. M. A general conditional-logistic model for affected-relative-pair linkage=20 studies. Am J Hum Genet. 65:1760-9, 1999. ADDRESS: Department of Epidemiology and Biostatistics, Rammelkamp Center=20 for Education and Research, MetroHealth Campus, Case Western Reserve=20 University, Cleveland, OH 44109, USA. olson@darwin.cwru.edu. Medline UID: 20046911 46. Rice, J. P.; Rochberg, N.; Neuman, R. J.; Saccone, N. L.; Liu, K. Y.;= =20 Zhang, X.Culverhouse, R. Covariates in linkage analysis. Genet Epidemiol. 17 Suppl 1:S691-5, 1999. ADDRESS: Department of Psychiatry, Washington University School of=20 Medicine, St. Louis, MO 63110, USA. Medline UID: 20065383 47. Rogus, J. J.; Cai, T.Wei, L. J. Issues in genomic screening: critical values, sample sizes, and the ability= =20 to detect linkage. Genet Epidemiol. 17 Suppl 1:S697-701, 1999. ADDRESS: Program for Population Genetics, Harvard School of Public Health,= =20 Boston, MA 02115, USA. Medline UID: 20065384 48. Saccone, N. L.; Downey, T. J. Jr; Meyer, D. J.; Neuman, R. J.Rice, J.= P. Mapping genotype to phenotype for linkage analysis. 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ADDRESS: Department of Public Health Sciences, University of Toronto,=20 Ontario, Canada. Medline UID: 20065388 52. Shugart, Y. Y.; Wehman, P.Collins, A. An evaluation of affected-sib-pair methods and transmission/disequilibrium= =20 tests for detecting genes underlying a complex trait. Genet Epidemiol. 17 Suppl 1:S727-30, 1999. ADDRESS: Department of Family Medicine and Clinical Epidemiology,=20 University of Pittsburgh, Pennsylvania, USA. Medline UID: 20065389 53. Strauch, K.; Fimmers, R.; Windemuth, C.; Hahn, A.; Wienker, T.=20 F.Baur, M. P. Linkage analysis with adequate modeling of a parent-of-origin effect. Genet Epidemiol. 17 Suppl 1:S331-6, 1999. ADDRESS: Institute for Medical Statistics, University of Bonn, Germany. Medline UID: 20065326 54. Thomas, D. C.; Qian, D.; Gauderman, W. J.; Siegmund, K.Morrison, J. L. A generalized estimating equations approach to linkage analysis in sibships= =20 in relation to multiple markers and exposure factors. Genet Epidemiol. 17 Suppl 1:S737-42, 1999. ADDRESS: Department of Preventive Medicine, University of Southern=20 California, Los Angeles 90033, USA. Medline UID: 20065391 55. Wang, K.; Vieland, V.Huang, J. A Bayesian approach to replication of linkage findings. Genet Epidemiol. 17 Suppl 1:S749-54, 1999. ADDRESS: Department of Statistics and Actuarial Science, University of=20 Iowa, Iowa City, USA. Medline UID: 20065393 56. Wheelan, S. and Makalowski, W. Genome research: the second decade. A report on the XI Cold Spring Harbor=20 Laboratory Meeting on Genome Mapping and Sequencing, May 13-17, 1998, Cold= =20 Spring Harbor, NY. Comput Chem. 24:125-7, 2000. ADDRESS: National Center for Biotechnology Information, National Library of= =20 Medicine, National Institutes of Health, Bethesda, MD 20894, USA. Medline UID: 20107496 57. Wicks, J. and Wilson, S. R. Modeling linkage and association with evaluation of common sampling schemes. Genet Epidemiol. 17 Suppl 1:S755-60, 1999. ADDRESS: Centre for Mathematics and its Applications, Australian National=20 University, Canberra, Australia. Medline UID: 20065394 58. Wilcox, M. A.; Smoller, J. W.; Lunetta, K. L.Neuberg, D. Using recursive partitioning for exploration and follow-up of linkage and=20 association analyses. Genet Epidemiol. 17 Suppl 1:S391-6, 1999. ADDRESS: Department of Epidemiology, Harvard School of Public Health,=20 Boston, Massachusetts, USA. Medline UID: 20065336 59. Wise, L. H. and Lewis, C. M. A method for meta-analysis of genome searches: application to simulated= data. Genet Epidemiol. 17 Suppl 1:S767-71, 1999. ADDRESS: Division of Medical and Molecular Genetics, Guy's, King's and St.= =20 Thomas' School of Medicine, King's College London, UK. Medline UID: 20065396 60. Yang, Q.; Khoury, M. J.; Atkinson, M.; Sun, F.; Cheng, R.Flanders, W.= D. Using case-control designs for genome-wide screening for associations=20 between genetic markers and disease susceptibility loci. Genet Epidemiol. 17 Suppl 1:S779-84, 1999. ADDRESS: Division of Birth Defects and Developmental Disabilities, Centers= =20 for Disease Control and Prevention, Atlanta, GA 30341, USA. Medline UID: 20065398 +--------------------------------------+--------------------------------+ | U.S. PIG GENOME COORDINATION PROJECT | Paid for by funds from the | | WEB: http://www.genome.iastate.edu | NRSP8 USDA /CSREES sponsored | | LIST: angenmap@db.genome.iastate.edu | PigGenome Coordination Program | +--------------------------------------+--------------------------------+