From crittend@itis.com Mon May 15 11:00:37 2000 Date: Sun, 14 May 2000 18:48:54 -0500 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: May, 2000 Mapping References Resent-Date: 14 May 2000 23:58:08 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; ************************************************************************* AnGenMap Discussion Mailing List | Mail distributed to 689 members http://www.genome.iastate.edu/community/discuss.html ************************************************************************* JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 5/00 1. Bensimon, D. Fast combinatorial cartography by FISH on combed genomic DNA. Genetica. 106:93-4, 1999. ADDRESS: Laboratoire de Physique Statistique de l'ENS, CNRS, associe aux universite Paris VI, France. Medline UID: 20176049 2. Bink, M. C.; Te Pas, M. F.; Harders, F. L.Janss, L. L. A transmission/disequilibrium test approach to screen for quantitative trait loci in two selected lines of large white pigs. Genet Res. 75:115-21, 2000. ADDRESS: DLO Institute for Animal Science and Health (ID-DLO), AB Lelystad, The Netherlands. m.c.a.m.bink@cpro.dlo.nl. Medline UID: 20205100 3. Collins, H. E.; Li, H.; Inda, S. E.; Anderson, J.; Laiho, K.; Tuomilehto, J.Seldin, M. F. A simple and accurate method for determination of microsatellite total allele content differences between DNA pools. Hum Genet. 106:218-26, 2000. ADDRESS: Department of Biological Chemistry and Medicine, University of California, Davis 95616-8669, USA. Medline UID: 20208353 4. Deng, H. W.; Chen, W. M.Recker, R. R. QTL fine mapping by measuring and testing for Hardy-Weinberg and linkage disequilibrium at a series of linked marker loci in extreme samples of populations. Am J Hum Genet. 66:1027-45, 2000. ADDRESS: Osteoporosis Research Center, Creighton University, Omaha, NE, 68131, USA. deng@creighton.edu. Medline UID: 20177503 5. Devaney, J. M.; Girard, J. E.Marino, M. A. DNA microsatellite analysis using ion-pair reversed-phase high-performance liquid chromatography. Anal Chem. 72:858-64, 2000. ADDRESS: Transgenomic Inc., Gaithersburg, Maryland 20878, USA. jdevaney@transgenomic.com. Medline UID: 20166101 6. Gessler, D. D. and Xu, S. Multipoint genetic mapping of quantitative trait loci with dominant markers in outbred populations. Genetica. 105:281-91, 1999. ADDRESS: Department of Botany and Plant Sciences, University of California, Riverside 92521, USA. gessler@evolution.ucr.edu. Medline UID: 20224177 7. Goldammer, T.; Brunner, R. M.; Kang'a, S.; Hanotte, O.Schwerin, M. Establishment of bovine chromosome region specific high resolution maps using microdissection. Anim Biotechnol. 10:113-8, 1999. ADDRESS: Forschungsinstitut fur die Biologie landwirtschaftlicher Nutztiere (FBN), Forschungsbereich Molekularbiologie, Dummerstorf, Germany. Medline UID: 20186201 8. Goring, H. H. and Terwilliger, J. D. Linkage analysis in the presence of errors I: complex-valued recombination fractions and complex phenotypes. Am J Hum Genet. 66:1095-106, 2000. ADDRESS: Department of Genetics and Development, Columbia University, New York, NY, USA. Medline UID: 20177507 9. Linkage analysis in the presence of errors II: marker-locus genotyping errors modeled with hypercomplex recombination fractions. Am J Hum Genet. 66:1107-18, 2000. ADDRESS: Department of Genetics and Development, Columbia University, New York, NY, USA. Medline UID: 20177508 10. Gottgens, B.; Barton, L. M.; Gilbert, J. G.; Bench, A. J.; Sanchez, M. J.; Bahn, S.; Mistry, S.; Grafham, D.; McMurray, A.; Vaudin, M.; Amaya, E.; Bentley, D. R.Green, A. R. Analysis of vertebrate SCL loci identifies conserved enhancers [see comments]. Nat Biotechnol. 18:181-6, 2000. ADDRESS: University of Cambridge, Department of Haematology, MRC Centre, Hills Road, Cambridge CB2 2QH, UK. Medline UID: 20124250 11. Grant, G. R.; Manduchi, E.; Cheung, V. G.Ewens, W. J. Significance testing for direct identity-by-descent mapping. Ann Hum Genet. 63 ( Pt 5):441-54, 1999. ADDRESS: Center for Bioinformatics, University of Pennsylvania, Philadelphia 19104-6021, USA. ggrant@pcbi.upenn.edu. Medline UID: 20197632 12. Griffin, D. K.; Haberman, F.; Masabanda, J.; O'Brien, P.; Bagga, M.; Sazanov, A.; Smith, J.; Burt, D. W.; Ferguson-Smith, M.Wienberg, J. Micro- and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome. Cytogenet Cell Genet. 87:278-81, 1999. ADDRESS: Department of Biological Sciences, Brunel University, Uxbridge, Middlesex, UK. Darren.Griffin@brunel.ac.uk. Medline UID: 20169212 13. Guillier-Gencik, Z.; Bernheim, A.Coullin, P. h. Generation of whole-chromosome painting probes specific to each chicken macrochromosome. Cytogenet Cell Genet. 87:282-5, 1999. ADDRESS: Laboratoire de Cytogenetique et de Genetique Oncologique, UMR 1599, Institut Gustave Roussy, Villejuif, France. guillier@igr.fr. Medline UID: 20169213 14. Guo, S. W. and Lange, K. Genetic mapping of complex traits: promises, problems, and prospects. Theor Popul Biol. 57:1-11, 2000. ADDRESS: The Max McGee National Research Center for Juvenile Diabetes, Department of Pediatrics, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, Wisconsin, 53226-0509, USA. Medline UID: 20175763 15. Guo, X. and Elston, R. C. Two-stage global search designs for linkage analysis I: use of the mean statistic for affected sib pairs. Genet Epidemiol. 18:97-110, 2000. ADDRESS: Department of Epidemiology and Biostatistics, Rammelkamp Center for Education and Research, MetroHealth Campus, Case Western Reserve University, Cleveland, Ohio 44109-1998, USA. Medline UID: 20108868 16. Two-stage global search designs for linkage analysis II: including discordant relative pairs in the study. Genet Epidemiol. 18:111-27, 2000. ADDRESS: Department of Epidemiology and Biostatistics, Rammelkamp Center for Education and Research, MetroHealth Campus, Case Western Reserve University, Cleveland, Ohio 44109-1998, USA. Medline UID: 20108869 17. Hill, A. V. Genetics and genomics of infectious disease susceptibility. Br Med Bull. 55:401-13, 1999. ADDRESS: Wellcome Trust Centre for Human Genetics, Nuffield Department of Clinical Medicine, University of Oxford, UK. Medline UID: 20188940 18. Hsieh, H. B.; Wang, M.; Lersch, R. A.; Kim, U. J.Weier, H. U. Rational design of landmark probes for quantitative DNA fiber mapping (QDFM). Nucleic Acids Res. 28:E30, 2000. ADDRESS: Life Sciences Division, MS 74-157, University of California, E. O. Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA. Medline UID: 20200684 19. Lin, S. and Speed, T. P. Relative efficiencies of the chi-square recombination models for gene mapping with human pedigree data. Ann Hum Genet. 63 ( Pt 1):81-95, 1999. ADDRESS: Department of Statistics, Ohio State University 43210-1247, USA. Medline UID: 20203009 20. Lindblad-Toh, K.; Winchester, E.; Daly, M. J.; Wang, D. G.; Hirschhorn, J. N.; Laviolette, J. P.; Ardlie, K.; Reich, D. E.; Robinson, E.; Sklar, P.; Shah, N.; Thomas, D.; Fan, J. B.; Gingeras, T.; Warrington, J.; Patil, N.; Hudson, T. J.Lander, E. S. Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse. Nat Genet. 24:381-6, 2000. ADDRESS: Whitehead Institute/MIT Center for Genome Research, Whitehead Institute for Biomedical Research, Cambridge, MA, USA. kersli@genome.wi.mit.edu 0400_381.html 400_381.html. Medline UID: 20206561 21. MacLean, C. J.; Martin, R. B.; Sham, P. C.; Wang, H.; Straub, R. E.Kendler, K. S. The trimmed-haplotype test for linkage disequilibrium. Am J Hum Genet. 66:1062-75, 2000. ADDRESS: Virginia Institute for Psychiatric and Behavioral Genetics, Medical College of Virginia, Virginia Commonwealth University, Richmond, VA, 23298, USA. cmaclean@bara.psi.vcu.edu. Medline UID: 20177505 22. Miller, W. So many genomes, so little time [news; comment]. Nat Biotechnol. 18:148-9, 2000. Medline UID: 20124241 23. Ostrander, E. A.; Galibert, F.Patterson, D. F. Canine genetics comes of age. Trends Genet. 16:117-24, 2000. ADDRESS: Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N., D4-100, Seattle, WA 98109-1024, USA. eostrand@fhcrc.org. Medline UID: 20156781 24. Pratt, S. C.; Daly, M. J.Kruglyak, L. Exact multipoint quantitative-trait linkage analysis in pedigrees by variance components. Am J Hum Genet. 66:1153-7, 2000. ADDRESS: Whitehead Institute for Biomedical Research, Cambridge, MA, USA. Medline UID: 20177514 25. Sasaki, T. and Burr, B. International Rice Genome Sequencing Project: the effort to completely sequence the rice genome. Curr Opin Plant Biol. 3:138-41, 2000. ADDRESS: Rice Genome Research Program, National Institute of Agrobiological Resources, Tsukuba, 305-8602, Japan. tsasaki@abr.affrc.go.jp. Medline UID: 20180461 26. Schmalzing, D.; Belenky, A.; Novotny, M. A.; Koutny, L.; Salas-Solano, O.; El-Difrawy, S.; Adourian, A.; Matsudaira, P.Ehrlich, D. Microchip electrophoresis: a method for high-speed SNP detection. Nucleic Acids Res. 28:E43, 2000. ADDRESS: Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02139, USA. Medline UID: 20221691 27. Sentinelli, F.; Lovari, S.; Vitale, M.; Giorgi, G.; Di Mario, U.Baroni, M. G. A simple method for non-radioactive PCR-SSCP using MDE gel solution and a midi gel format: application for the detection of variants in the GLUT1 and CTLA-4 genes. J Biotechnol. 78:201-4, 2000. ADDRESS: Department of Clinica Science, Institute II Clinica Medica, Division of Endocrinology, University of Rome 'La Sapienza', 00161, Rome, Italy. Medline UID: 20191623 28. Slager, S. L.; Huang, J.Vieland, V. J. Effect of allelic heterogeneity on the power of the transmission disequilibrium test. Genet Epidemiol. 18:143-56, 2000. ADDRESS: Department of Preventive Medicine and Environmental Health, Division of Biostatistics, University of Iowa, Iowa City 52242, USA. susan.slager@uiowa.edu. Medline UID: 20108871 29. Wang, J.; Guerra, R.Cohen, J. A statistically robust variance-components approach for quantitative trait linkage analysis. Ann Hum Genet. 63 ( Pt 3):249-62, 1999. ADDRESS: Center for Human Nutrition, University of Texas Southwestern Medical Center at Dallas 75235-9052, USA. wang@crcdec.swmed.edu. Medline UID: 20203024 30. Wise, L. H.; Lanchbury, J. S.Lewis, C. M. Meta-analysis of genome searches. Ann Hum Genet. 63 ( Pt 3):263-72, 1999. ADDRESS: Division of Medical and Molecular Genetics, Guy's, King's and St. Thomas' School of Medicine, Guy's Hospital, London, UK. Medline UID: 20203025 31. Xu, X.; Peng, M.Fang, Z. The direction of microsatellite mutations is dependent upon allele length. Nat Genet. 24:396-9, 2000. ADDRESS: Program for Population Genetics, Harvard School of Public Health, Boston, MA, USA. xxu@hsph.harvard.edu 0400_396.html 400_396.html. Medline UID: 20206564 32. Zhao, H.; Pakstis, A. J.; Kidd, J. R.Kidd, K. K. Assessing linkage disequilibrium in a complex genetic system. I. Overall deviation from random association. Ann Hum Genet. 63 ( Pt 2):167-79, 1999. ADDRESS: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT 06520, USA. Medline UID: 20203015 33. Zhao, L.; Hayes, K.Glassman, A. Enhanced detection of chromosomal abnormalities with the use of RxFISH multicolor banding technique. Cancer Genet Cytogenet. 118:108-11, 2000. ADDRESS: Clinical Cytogenetics, Division of Pathology and Laboratory Medicine, M. D. Anderson Cancer Center, The University of Texas, Houston, TX 77030, USA. Medline UID: 20213313 +--------------------------------------+--------------------------------+ | U.S. PIG GENOME COORDINATION PROJECT | Paid for by funds from the | | WEB: http://www.genome.iastate.edu | NRSP8 USDA /CSREES sponsored | | LIST: angenmap@db.genome.iastate.edu | PigGenome Coordination Program | +--------------------------------------+--------------------------------+