From crittend@itis.com Tue Jul 31 11:23:22 2001 Date: Sat, 28 Jul 2001 16:16:07 -0500 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: Mapping References for July, 2001 Resent-Date: 28 Jul 2001 21:18:28 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 851 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 7/01 1. Abdel-Azim, G. and Freeman, A. E. A rapid method for computing the inverse of the gametic covariance matrix between relatives for a marked quantitative trait locus. Genet Sel Evol. 33:153-73, 2001. ADDRESS: Department of Animal Science, Iowa State University, Ames, IA 50011, USA. gaazim@iastate.edu. Medline UID: 21232799 2. Abecasis, G. R.; Cherny, S. S.Cardon, L. R. The impact of genotyping error on family-based analysis of quantitative traits. Eur J Hum Genet. 9:130-4, 2001. ADDRESS: Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. Medline UID: 21214716 3. Abecasis, G. R.; Cookson, W. O.Cardon, L. R. The power to detect linkage disequilibrium with quantitative traits in selected samples. Am J Hum Genet. 68:1463-74, 2001. ADDRESS: University of Oxford, Oxford, OX3 7BN, United Kingdom. Medline UID: 21313108 4. Abraham, T. W. Preparation of nonradioactive probes for in situ hybridization. Methods. 23:297-302, 2001. ADDRESS: Ambion, Inc., 2130 Woodward Street, Austin, Texas 78744, USA. Medline UID: 21217098 5. Agrawal, A. F. Sexual selection and the maintenance of sexual reproduction. Nature. 411:692-5, 2001. ADDRESS: Department of Biology, Indiana University, Bloomington 47405-3700, USA. aagrawal@bio.indiana.edu. Medline UID: 21289219 6. Akey, J.; Jin, L.Xiong, M. Haplotypes vs single marker linkage disequilibrium tests: what do we gain? Eur J Hum Genet. 9:291-300, 2001. ADDRESS: Human Genetics Center, University of Texas-Houston, Houston, Texas 77225, USA. Medline UID: 21214743 7. Akey, J. M.; Zhang, K.; Xiong, M.; Doris, P.Jin, L. The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures. Am J Hum Genet. 68:1447-56, 2001. ADDRESS: Human Genetics Center, School of Public Health, University of Texas-Houston, Houston, TX, 77030, USA. jakey@gsbs3.gs.uth.tmc.edu. Medline UID: 21257504 8. Barta, C.; Ronai, Z.; Sasvari-Szekely, M.Guttman, A. Rapid single nucleotide polymorphism analysis by primer extension and capillary electrophoresis using polyvinyl pyrrolidone matrix. Electrophoresis. 22:779-82, 2001. ADDRESS: Syngenta Agricultural Discovery Institute, San Diego, CA 92121, USA. Medline UID: 21190577 9. Benos, P. V.; Gatt, M. K.; Murphy, L.; Harris, D.; Barrell, B.; Ferraz, C.; Vidal, S.; Brun, C.; Demaille, J.; Cadieu, E.; Dreano, S.; Gloux, S.; Lelaure, V.; Mottier, S.; Galibert, F.; Borkova, D.; Minana, B.; Kafatos, F. C.; Bolshakov, S.; Siden-Kiamos, I.; Papagiannakis, G.; Spanos, L.; Louis, C.; Madueno, E.; de Pablos, B.; Modolell, J.; Peter, A.; Schottler, P.; Werner, M.; Mourkioti, F.; Beinert, N.; Dowe, G.; Schafer, U.; Jackle, H.; Bucheton, A.; Callister, D.; Campbell, L.; Henderson, N. S.; McMillan, P. J.; Salles, C.; Tait, E.; Valenti, P.; Saunders, R. D.; Billaud, A.; Pachter, L.; Glover, D. M.Ashburner, M. From first base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. Genome Res. 11:710-30, 2001. ADDRESS: EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. Medline UID: 21235185 10. Bost, B.; de Vienne, D.; Hospital, F.; Moreau, L.Dillmann, C. 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Medline UID: 21232797 14. Davenport, R. J. Genetics. Faster maps mean fewer mice. Science. 292:1814-5, 2001. Medline UID: 21291412 15. Elston, R. C. Introduction and overview. Statistical methods in genetic epidemiology. Stat Methods Med Res. 9:527-41, 2000. ADDRESS: Department of Epidemiology and Biostatistics, Rammelkamp Center for Education and Research, Case Western Reserve University, Cleveland, Ohio 44109-1998, USA. rce@darwin.cwru.edu. Medline UID: 21202269 16. Flint, J. and Mott, R. Finding the molecular basis of quantitative traits: successes and pitfalls. Nat Rev Genet. 2:437-45, 2001. ADDRESS: Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK. jf@molbiol.ox.ac.uk. Medline UID: 21283247 17. Gauderman, W. J. and Siegmund, K. D. Gene-environment interaction and affected sib pair linkage analysis. Hum Hered. 52:34-46, 2001. ADDRESS: Department of Preventive Medicine, University of Southern California, 1540 Alcazar Street, Los Angeles, CA 90089, USA. jimg@usc.edu. Medline UID: 21257957 18. Giffard, P. M.; McMahon, J. A.; Gustafson, H. M.; Barnard, R. T.Voisey, J. Comparison of competitively primed and conventional allele-specific nucleic acid amplification. Anal Biochem. 292:207-15, 2001. ADDRESS: Cooperative Research Centre for Diagnostic Technologies, Queensland University of Technology, Brisbane, Australia. p.giffard@qut.edu.au. Medline UID: 21255179 19. Goldstein, D. R.; Dudoit, S.Speed, T. P. Power and robustness of a score test for linkage analysis of quantitative traits using identity by descent data on sib pairs. Genet Epidemiol. 20:415-31, 2001. ADDRESS: Department of Statistics, University of California at Los Angeles, Los Angeles, CA 90095-1554, USA. darlene@stat.ucla.edu. Medline UID: 21218888 20. Gomes, I.; Collins, A.; Lonjou, C.; Thomas, N. S.; Wilkinson, J.; Watson, M.Morton, N. Hardy-Weinberg quality control. Ann Hum Genet. 63:535-8, 1999. ADDRESS: Human Genetics, University of Southhampton, Duthie Building, southhampton General Hospital, Tremona Road, Southhampton, UK. Medline UID: 21141786 21. Gomez-Raya, L. Biased estimation of the recombination fraction using half-sib families and informative offspring. Genetics. 157:1357-67, 2001. ADDRESS: AKVAFORSK, Institute for Aquaculture Research, N-1432 As, Norway. luis.gomez@irta.es. Medline UID: 21135697 22. Green, E. D. and Chakravarti, A. The human genome sequence expedition: views from the "base camp". Genome Res. 11:645-51, 2001. ADDRESS: Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA. egreen@nhgri.nih.gov. Medline UID: 21235177 23. Grupe, A.; Germer, S.; Usuka, J.; Aud, D.; Belknap, J. K.; Klein, R. F.; Ahluwalia, M. K.; Higuchi, R.Peltz, G. In silico mapping of complex disease-related traits in mice. Science. 292:1915-8, 2001. ADDRESS: Department of Genetics and Genomics, Roche Bioscience, Palo Alto, CA 94303, USA. Medline UID: 21291439 24. Hall, D.; Bhandarkar, S. M.; Arnold, J.Jiang, T. Physical mapping with automatic capture of hybridization data. Bioinformatics. 17:205-13, 2001. ADDRESS: Department of Computer Science, The University of Georgia, Athens, GA 30602, USA. Medline UID: 21193009 25. Hall, D.; Bhandarkar, S. M.Wang, J. ODS2: a multiplatform software application for creating integrated physical and genetic maps. Genetics. 157:1045-56, 2001. ADDRESS: Department of Computer Science, The University of Georgia, Athens, Georgia 30602-7404, USA. Medline UID: 21135670 26. Hannis, J. C. and Muddiman, D. C. Genotyping short tandem repeats using flow injection and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Commun Mass Spectrom. 15:348-50, 2001. ADDRESS: Department of Chemistry, Virginia Commonwealth University, Richmond, VA 23284, USA. Medline UID: 21134546 27. Hayden, M. J. and Sharp, P. J. Sequence-tagged microsatellite profiling (STMP): a rapid technique for developing SSR markers. Nucleic Acids Res. 29:E43-3, 2001. ADDRESS: Plant Breeding Institute, University of Sydney, PMB 11, Camden, NSW 2570, Australia and Quality Wheat CRC, Locked Bag 1345, PO North Ryde, NSW 2113, Australia. matthewh@camden.usyd.edu.au. Medline UID: 21189597 28. Targeted development of informative microsatellite (SSR) markers. Nucleic Acids Res. 29:E44-4, 2001. ADDRESS: Plant Breeding Institute, University of Sydney, PMB 11, Camden, NSW 2570, Australia and Quality Wheat CRC, Locked Bag 1345, PO North Ryde, NSW 2113, Australia. matthewh@camden.usyd.edu.au. Medline UID: 21189598 29. Huang, J. and Vieland, V. J. Comparison of 'model-free' and 'model-based' linkage statistics in the presence of locus heterogeneity: single data set and multiple data set applications. Hum Hered. 51:217-25, 2001. ADDRESS: Department of Statistics and Actuarial Science, University of Iowa, Iowa City, Iowa 52242, USA. jian-huang@uiowa.edu. Medline UID: 21184469 30. Hvidsten, T. R.; Komorowski, J.; Sandvik, A. K.Laegreid, A. Predicting gene function from gene expressions and ontologies. Pac Symp Biocomput. 299-310, 2001. ADDRESS: Knowledge Systems Group, Department of Information and Computer Science, Norwegian University of Science and Technology, 7491 Trondheim, Norway. Medline UID: 21161487 31. Kan, Z.; Rouchka, E. C.; Gish, W. R.States, D. J. Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Res. 11:889-900, 2001. ADDRESS: Center for Computational Biology, Washington University, St. Louis, Missouri 63110, USA. Medline UID: 21235197 32. Kaplan, N. and Morris, R. Issues concerning association studies for fine mapping a susceptibility gene for a complex disease. Genet Epidemiol. 20:432-57, 2001. ADDRESS: Biostatistics Branch, National Institute of Environmental Health Sciences, P.O. Box 12233, Research Triangle Park, NC 27709-2233, USA. norm@seth.niehs.nih.gov. Medline UID: 21218889 33. Korol, A. B.; Ronin, Y. I.; Itskovich, A. M.; Peng, J.Nevo, E. Enhanced efficiency of quantitative trait loci mapping analysis based on multivariate complexes of quantitative traits. Genetics. 157:1789-803, 2001. ADDRESS: Institute of Evolution, University of Haifa, Haifa 31905, Israel. korol@esti.haifa.ac.il. Medline UID: 21186058 34. Kumar, S.; Gadagkar, S. R.; Filipski, A.Gu, X. Determination of the number of conserved chromosomal segments between species. Genetics. 157:1387-95, 2001. ADDRESS: Department of Biology, Arizona State University, Tempe, Arizona 85287-1501, USA. s.kumar@asu.edu. Medline UID: 21135699 35. Li, J. L.; Deng, H.; Lai, D. B.; Xu, F.; Chen, J.; Gao, G.; Recker, R. R.Deng, H. W. Toward high-throughput genotyping: dynamic and automatic software for manipulating large-scale genotype data using fluorescently labeled dinucleotide markers. Genome Res. 11:1304-14, 2001. ADDRESS: Osteoporosis Research Center, Creighton University, Omaha, Nebraska 68131, USA. Medline UID: 21329064 36. Liu, X.; Brutlag, D. L.Liu, J. S. BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac Symp Biocomput. 127-38, 2001. ADDRESS: Stanford Medical Informatics, 251 Campus Dr. X215, Stanford University, Stanford, CA 94305-5479, USA. xliu@smi.stanford.edu. Medline UID: 21161473 37. Lutucuta, S.; Ballantyne, C. M.; Elghannam, H.; Gotto, A. M. JrMarian, A. J. Novel polymorphisms in promoter region of atp binding cassette transporter gene and plasma lipids, severity, progression, and regression of coronary atherosclerosis and response to therapy. Circ Res. 88:969-73, 2001. ADDRESS: Sections of Cardiology and Atherosclerosis, Department of Medicine, Baylor College of Medicine, Houston, Texas, USA. Medline UID: 21266716 38. Lyons, R. J.; Deane, R.; Lynch, D. K.; Ye, Z. S.; Sanderson, G. M.; Eyre, H. J.; Sutherland, G. R.Daly, R. J. Identification of a novel human tankyrase through its interaction with the adaptor protein Grb14. J Biol Chem. 276:17172-80, 2001. ADDRESS: Cancer Research Program, Garvan Institute of Medical Research, St. Vincent's Hospital, Sydney, New South Wales 2010, Australia. Medline UID: 21264473 39. Maddox, J. F.; Davies, K. P.; Crawford, A. M.; Hulme, D. J.; Vaiman, D.; Cribiu, E. P.; Freking, B. A.; Beh, K. J.; Cockett, N. E.; Kang, N.; Riffkin, C. D.; Drinkwater, R.; Moore, S. S.; Dodds, K. G.; Lumsden, J. M.; van Stijn, T. C.; Phua, S. H.; Adelson, D. L.; Burkin, H. R.; Broom, J. E.; Buitkamp, J.; Cambridge, L.; Cushwa, W. T.; Gerard, E.; Galloway, S. M.; Harrison, B.; Hawken, R. J.; Hiendleder, S.; Henry, H. M.; Medrano, J. F.; Paterson, K. A.; Schibler, L.; Stone, R. T.van Hest, B. An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Res. 11:1275-89, 2001. ADDRESS: Centre for Animal Biotechnology (CAB), The University of Melbourne, Parkville 3052, Australia. jillm@rubens.its.unimelb.edu.au. Medline UID: 21329061 40. Maki, Y.; Tominaga, D.; Okamoto, M.; Watanabe, S.Eguchi, Y. Development of a system for the inference of large scale genetic networks. Pac Symp Biocomput. 446-58, 2001. ADDRESS: Dept. of Biochemical Engineering & Science, Kyushu Institute of Technology, 680-4, Kawazu, Iizuka-city, Fukuoka 820-8502, Japan. Medline UID: 21161499 41. Meksem, K.; Ruben, E.; Hyten, D.; Triwitayakorn, K.Lightfoot, D. A. Conversion of AFLP bands into high-throughput DNA markers. Mol Genet Genomics. 265:207-14, 2001. 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A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation. Genome Res. 11:458-70, 2001. ADDRESS: Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109-0618, USA. Medline UID: 21154921 45. O'Connell, J. R. Rapid multipoint linkage analysis via inheritance vectors in the Elston-Stewart algorithm. Hum Hered. 51:226-40, 2001. ADDRESS: Department of Human Genetics, University of Pittsburgh, Pittsburgh, Pa., USA, and The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. jeff@watson.hgen.pitt.edu. Medline UID: 21184470 46. Pavlidis, P.; Furey, T. S.; Liberto, M.; Haussler, D.Grundy, W. N. Promoter region-based classification of genes. Pac Symp Biocomput. 151-63, 2001. ADDRESS: Columbia Genome Center, Columbia University, USA. pp175@columbia.edu. Medline UID: 21161475 47. Pedersen, A. M. and Jensen, J. L. 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ADDRESS: Computer Science Department, The University of California at Santa Cruz, Santa Cruz 95064, USA. rogic@cse.ucsc.edu. Medline UID: 21235192 54. Rzhetsky, A. and Morozov, P. Markov chain Monte Carlo computation of confidence intervals for substitution-rate variation in proteins. Pac Symp Biocomput. 203-14, 2001. ADDRESS: Columbia Genome Center, Columbia University, 1050 St. Nicholas Avenue, Unit 109, New York, NY 10032, USA. ar345@columbia.edu. Medline UID: 21161479 55. Sachidanandam, R.; Weissman, D.; Schmidt, S. C.; Kakol, J. M.; Stein, L. D.; Marth, G.; Sherry, S.; Mullikin, J. C.; Mortimore, B. J.; Willey, D. L.; Hunt, S. E.; Cole, C. G.; Coggill, P. C.; Rice, C. M.; Ning, Z.; Rogers, J.; Bentley, D. R.; Kwok, P. Y.; Mardis, E. R.; Yeh, R. T.; Schultz, B.; Cook, L.; Davenport, R.; Dante, M.; Fulton, L.; Hillier, L.; Waterston, R. H.; McPherson, J. D.; Gilman, B.; Schaffner, S.; Van Etten, W. J.; Reich, D.; Higgins, J.; Daly, M. 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Medline UID: 21153406 **************************************************************************** ****************** Lyman/Margaret Crittenden Phone: 608-798-0791 8550 Highway 19 e-mail: crittend@itis.com Cross Plains, WI 53528-9300 USA **************************************************************************** ****************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/