From paolo.zambonelli@stpa.unibo.it Tue Feb 12 13:01:05 2002 Date: Mon, 11 Feb 2002 13:27:53 +0100 From: Paolo Zambonelli To: Multiple Recipients of Subject: Janauary, 2002 Mapping References Resent-Date: 11 Feb 2002 12:20:33 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 859 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ *This message was transferred with a trial version of CommuniGate(tm) Pro* JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 1/02 1. Altmuller, J.; Palmer, L. J.; Fischer, G.; Scherb, H.Wjst, M. Genomewide scans of complex human diseases: true linkage is hard to find. Am J Hum Genet. 69:936-50, 2001. ADDRESS: Institute of Epidemiology, GSF [corrected] National Research Center for Environment and Health, Neuherberg, Germany. altmueller@gsf.de. Medline UID: 21473742 2. Camargo, A. A.; Samaia, H. P.; Dias-Neto, E.; Simao, D. F.; Migotto, I. A.; Briones, M. R.; Costa, F. F.; Nagai, M. A.; Verjovski-Almeida, S.; Zago, M. A.; Andrade, L. E.; Carrer, H.; El-Dorry, H. F.; Espreafico, E. M.; Habr-Gama, A.; Giannella-Neto, D.; Goldman, G. H.; Gruber, A.; Hackel, C.; Kimura, E. T.; Maciel, R. M.; Marie, S. K.; Martins, E. A.; Nobrega, M. P.; Paco-Larson, M. L.; Pardini, M. I.; Pereira, G. G.; Pesquero, J. B.; Rodrigues, V.; Rogatto, S. R.; da Silva, I. D.; Sogayar, M. C.; Sonati, M. F.; Tajara, E. H.; Valentini, S. R.; Alberto, F. L.; Amaral, M. E.; Aneas, I.; Arnaldi, L. A.; de Assis, A. M.; Bengtson, M. H.; Bergamo, N. A.; Bombonato, V.; de Camargo, M. E.; Canevari, R. A.; Carraro, D. M.; Cerutti, J. M.; Correa, M. L.; Correa, R. F.; Costa, M. C.; Curcio, C.; Hokama, P. O.; Ferreira, A. J.; Furuzawa, G. K.; Gushiken, T.; Ho, P. L.; Kimura, E.; Krieger, J. E.; Leite, L. C.; Majumder, P.; Marins, M.; Marques, E. R.; Melo, A. S.; Melo, M.; Mestriner, C. A.; Miracca, E. C.; Miranda, D. C.; Nascimento, A. L.; Nobrega, F. G.; Ojopi, E. P.; Pandolfi, J. R.; Pessoa, L. G.; Prevedel, A. C.; Rahal, P.; Rainho, C. A.; Reis, E. M.; Ribeiro, M. L.; da Ros, N.; de Sa, R. G.; Sales, M. M.; Sant'anna, S. C.; dos Santos, M. L.; da Silva, A. M.; da Silva, N. P.; Silva, W. A. Jr; da Silveira, R. A.; Sousa, J. F.; Stecconi, D.; Tsukumo, F.; Valente, V.; Soares, F.; Moreira, E. S.; Nunes, D. N.; Correa, R. G.; Zalcberg, H.; Carvalho, A. F.; Reis, L. F.; Brentani, R. R.; Simpson, A. J.de Souza, S. J. The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome. Proc Natl Acad Sci U S A. 98:12103-8, 2001. ADDRESS: Ludwig Institute for Cancer Research, 01509-010, Sao Paulo, Brazil. Medline UID: 21477436 6. DelRio-LaFreniere, S. A. and McGlennen, R. C. Simultaneous allele-specific amplification: a strategy using modified primer-template mismatches for SNP detection--application to prothrombin 20210A (factor II) and factor V Leiden (1691A) gene mutations. Mol Diagn. 6:201-9, 2001. ADDRESS: University of Minnesota, Minneapolis, MN, USA. Medline UID: 21455577 17. Methods for genotyping single nucleotide polymorphisms. Annu Rev Genomics Hum Genet. 2:235-58, 2001. ADDRESS: Washington University School of Medicine, St. Louis, Missouri 63110, USA. kwok@genetics.wustl.edu. Medline UID: 21557855 18. Lisacek, F. C.; Traini, M. D.; Sexton, D.; Harry, J. L.Wilkins, M. R. Strategy for protein isoform identification from expressed sequence tags and its application to peptide mass fingerprinting. Proteomics. 1:186-93, 2001. ADDRESS: Proteome Systems Limited, Sydney, NSW. lisacek@genetique.uvsq.fr. Medline UID: 21537926 20. Mackay, T. F. The genetic architecture of quantitative traits. Annu Rev Genet. 35:303-39, 2001. ADDRESS: Department of Genetics, North Carolina State University, Raleigh, Box 7614, North Carolina 27695, USA. trudy_mackay@ncsu.edu. Medline UID: 21556877 26. Pong-Wong, R.; George, A. W.; Woolliams, J. A.Haley, C. S. A simple and rapid method for calculating identity-by-descent matrices using multiple markers. Genet Sel Evol. 33:453-71, 2001. ADDRESS: Roslin Institute (Edinburgh), Roslin, Midlothian EH25 9PS, UK. ricardo.pong-wong@bbsrc.ac.uk. Medline UID: 21570086 31. Sen, S. and Churchill, G. A. A statistical framework for quantitative trait mapping. Genetics. 159:371-87, 2001. ADDRESS: The Jackson Laboratory, Bar Harbor, Maine 04609, USA. Medline UID: 21444852 33. Sobel, E.; Sengul, H.Weeks, D. E. Multipoint estimation of identity-by-descent probabilities at arbitrary positions among marker loci on general pedigrees. Hum Hered. 52:121-31, 2001. ADDRESS: Department of Human Genetics, University of California, Los Angeles, CA, USA. Medline UID: 21472275 36. Weng, J.; Lehto, M.; Berglund, A.Groop, L. C. An automated fluorescent single strand conformation polymorphism technique for high throughput mutation screening. Chin Med J (Engl). 114:1147-50, 2001. ADDRESS: Department of Endocrinology, First Affiliated Hospital of Sun Yet-San University of Medical Sciences, Guangzhou 510080, China. gzwengjp@public.guangzhou.gd.cn. Medline UID: 21586912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/ From crittend@itis.com Mon Feb 18 13:14:09 2002 Date: Fri, 15 Feb 2002 20:29:41 -0800 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: February, 2002 Mapping References Resent-Date: 16 Feb 2002 02:27:55 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 859 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 2/2002 1. Abecasis, G. R.; Cherny, S. S.; Cookson, W. O.Cardon, L. R. Merlin--rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet. 30:97-101, 2002. ADDRESS: The Wellcome Trust Center for Human Genetics, University of Oxford, Oxford OX3 7BN, UK. goncalo@umich.edu. Medline UID: 21624584 2. Andersen, C. L.; Hostetter, G.; Grigoryan, A.; Sauter, G.Kallioniemi, A. Improved procedure for fluorescence in situ hybridization on tissue microarrays. Cytometry. 45:83-6, 2001. ADDRESS: Cancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892-4465, USA. Medline UID: 21473989 3. Benters, R.; Niemeyer, C. M.; Drutschmann, D.; Blohm, D.Wohrle, D. DNA microarrays with PAMAM dendritic linker systems. Nucleic Acids Res. 30:E10, 2002. ADDRESS: Chimera Biotec GmbH, Schwachhauser Heerstrasse 30A, 28209 Bremen, Germany. Medline UID: 21648932 4. Blake, J. A.; Richardson, J. E.; Bult, C. J.; Kadin, J. A.Eppig, J. T. The Mouse Genome Database (MGD): the model organism database for the laboratory mouse. Nucleic Acids Res. 30:113-5, 2002. ADDRESS: The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA. jblake@informatics.jax.org CORPORATE NAME: The Mouse Genome Database Group. Medline UID: 21624789 5. Devlin, B.; Roeder, K.Bacanu, S. A. Unbiased methods for population-based association studies. Genet Epidemiol. 21:273-84, 2001. ADDRESS: Department of Psychiatry, University of Pittsburgh, Pittsburgh, Pennsylvania, USA. devlinbj@msx.upmc.edu. Medline UID: 21626206 6. Ekstrom, C. T. Power of multipoint identity-by-descent methods to detect linkage using variance component models. Genet Epidemiol. 21:285-98, 2001. ADDRESS: Department of Biostatistics, University of Copenhagen, Copenhagen, Denmark. ce@biostat.ku.dk. Medline UID: 21626207 7. Finch, S. J.; Chen, C. H.; Gordon, D.Mendell, N. R. A study comparing precision of the maximum multipoint heterogeneity LOD statistic to three model-free multipoint linkage methods. Genet Epidemiol. 21:315-25, 2001. ADDRESS: Department of Applied Mathematics and Statistics, State University of New York at Stony Brook, Stony Brook, New York, USA. Medline UID: 21626209 8. Gilbert, D. G. euGenes: a eukaryote genome information system. Nucleic Acids Res. 30:145-8, 2002. ADDRESS: Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA. gilbertd@bio.indiana.edu. Medline UID: 21624797 9. Huber, M.; Losert, D.; Hiller, R.; Harwanegg, C.; Mueller, M. W.Schmidt, W. M. Detection of single base alterations in genomic DNA by solid phase polymerase chain reaction on oligonucleotide microarrays. Anal Biochem. 299:24-30, 2001. ADDRESS: VBC-Genomics Bioscience Research GmbH, 1030 Vienna, Austria. Medline UID: 21583133 10. Jansen, R.; Greenbaum, D.Gerstein, M. Relating whole-genome expression data with protein-protein interactions.12:37-46, 2002. ADDRESS: Department of Molecular Biophysics, Yale University, New Haven, Connecticut 06520, USA. Medline UID: 21638310 11. Manly, K. F.; Cudmore, R. H. JrMeer, J. M. Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome. 12:930-2, 2001. ADDRESS: Cellular and Molecular Biology, Roswell Park Cancer Institute, Buffalo, New York 14263, USA. kenneth.manly@roswellpark.org. Medline UID: 21564390 12. Matin, A. and Nadeau, J. H. Sensitized polygenic trait analysis. Trends Genet. 17:727-31, 2001. ADDRESS: Dept of Cancer Genetics, University of Texas, M.D. Anderson Cancer Center, Houston, TX 77030, USA. Medline UID: 21576870 13. Matyas, G.; Giunta, C.; Steinmann, B.; Hossle, J. P.Hellwig, R. Quantification of single nucleotide polymorphisms: a novel method that combines primer extension assay and capillary electrophoresis. Hum Mutat. 19:58-68, 2002. ADDRESS: University Children's Hospital, Division of Metabolism and Molecular Pediatrics, Zurich, Switzerland. gabor.matyas@kispi.unizh.ch. Medline UID: 21623219 14. Niu, T.; Qin, Z. S.; Xu, X.Liu, J. S. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet. 70:157-69, 2002. ADDRESS: Program for Population Genetics, Harvard School of Public Health, Boston, MA, USA. Medline UID: 21606086 15. Roten, C. A.; Gamba, P.; Barblan, J. L.Karamata, D. Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes. Nucleic Acids Res. 30:142-4, 2002. ADDRESS: Institut de Genetique et de Biologie Microbiennes, rue Cesar-Roux 19, CH-1005 Lausanne, Switzerland. claude-alain.roten@igbm.unil.ch. Medline UID: 21624796 16. Searls, D. B. Bioinformatics tools for whole genomes. Annu Rev Genomics Hum Genet. 1:251-79, 2000. ADDRESS: Bioinformatics Department, SmithKline Beecham Pharmaceuticals, King of Prussia, Pennsylvania 19406, USA. David_B_Searls@sbphrd.com. Medline UID: 21557836 17. Sieberts, S. K.; Wijsman, E. M.Thompson, E. A. Relationship inference from trios of individuals, in the presence of typing error. Am J Hum Genet. 70:170-80, 2002. ADDRESS: Department of Statistics, University of Washington, Seattle, 98195, USA. Medline UID: 21606076 18. Song, K. K.; Feingold, E.Weeks, D. E. Statistics for nonparametric linkage analysis of X-linked traits in general pedigrees. Am J Hum Genet. 70:181-91, 2002. ADDRESS: Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA 15261, USA. ksong@pitt.edu. Medline UID: 21606073 19. Syvanen, A. C. Accessing genetic variation: genotyping single nucleotide polymorphisms. Nat Rev Genet. 2:930-42, 2001. ADDRESS: Department of Medical Sciences - Molecular Medicine, Uppsala University, University Hospital, 75185 Uppsala, Sweden. Ann-Christine.Syvanen@medsci.uu.se. Medline UID: 21590651 20. The FlyBase Consortium. The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 30:106-8, 2002. ADDRESS: FlyBase, The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA. CORPORATE NAME: The FlyBase Consortium. Medline UID: 21624787 21. Tsongalis, G. J.; Rainey, B. J.Hodges, K. A. READIT: a novel technology used in the interrogation of nucleic acid sequences for single-nucleotide polymorphisms. Exp Mol Pathol. 71:222-5, 2001. ADDRESS: Department of Pathology and Laboratory Medicine, Hartford Hospital, Hartford, Connecticut 06102, USA. Medline UID: 21592269 22. Uimari, P. and Sillanpaa, M. J. Bayesian oligogenic analysis of quantitative and qualitative traits in general pedigrees. Genet Epidemiol. 21:224-42, 2001. ADDRESS: Rolf Nevanlinna Institute, University of Helsinki, Finland. pekka.uimari@csc.fi. Medline UID: 21522973 23. Wachtel, S. S. and Tharapel, A. T. FISH and PRINS: competing or complementary technologies? Am J Med Genet. 107:97-8, 2002. Medline UID: 21665534 24. Williams, R. W.; Gu, J.; Qi, S.Lu, L. The genetic structure of recombinant inbred mice: high-resolution consensus maps for complex trait analysis. Genome Biol. 2:RESEARCH0046, 2001. ADDRESS: Center of Genomics and Bioinformatics University of Tennessee Health Science Center, College of Medicine, Memphis, TN 38163, USA. rwilliam@nb.utmem.edu. Medline UID: 21601137 25. Zwick, M. E.; Cutler, D. J.Chakravarti, A. Patterns of genetic variation in Mendelian and complex traits. Annu Rev Genomics Hum Genet. 1:387-407, 2000. ADDRESS: Department of Genetics, and Center for Human Genetics, Case Western Reserve University School of Medicine, and University Hospitals of Cleveland, Cleveland, Ohio 44106, USA. Medline UID: 21557840 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/