From crittend@itis.com Tue Apr 15 08:49:22 2003 Date: Mon, 14 Apr 2003 10:05:55 -0700 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: April, 2003 Mapping References Resent-Date: 14 Apr 2003 15:09:12 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 931 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 4/03 1. Andersen, P. S.; Jespersgaard, C.; Vuust, J.; Christiansen, M.Larsen, L. A. High-throughput single strand conformation polymorphism mutation detection by automated capillary array electrophoresis: validation of the method. Hum Mutat. 21:116-22, 2003. ADDRESS: Department of Clinical Biochemistry, Statens Serum Institut, Copenhagen, Denmark. psa@ssi.dk. Medline UID: 22439671 2. Blazej, R. G.; Paegel, B. M.Mathies, R. A. Polymorphism ratio sequencing: a new approach for single nucleotide polymorphism discovery and genotyping. Genome Res. 13:287-93, 2003. ADDRESS: University of California, Berkeley/University of California, San Francisco Joint Bioengineering Graduate Group, Berkeley, California 94720, USA. Medline UID: 22453525 3. Botstein, D. and Risch, N. Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease. Nat Genet. 33 Suppl:228-37, 2003. ADDRESS: Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA. Botstein@genome.Stanford.edu. Medline UID: 22497804 4. Elnitski, L.; Hardison, R. C.; Li, J.; Yang, S.; Kolbe, D.; Eswara, P.; O'Connor, M. J.; Schwartz, S.; Miller, W.Chiaromonte, F. Distinguishing regulatory DNA from neutral sites. Genome Res. 13:64-72, 2003. ADDRESS: Departments of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA. Medline UID: 22417275 5. Jaenisch, R. and Bird, A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet. 33 Suppl:245-54, 2003. ADDRESS: Whitehead Institute for Biomedical Research and Department of Biology, Massachusetts Institute of Technology, 9 Cambridge Center, Cambridge, MA 02142, USA. Medline UID: 22497806 6. Jaffe, D. B.; Butler, J.; Gnerre, S.; Mauceli, E.; Lindblad-Toh, K.; Mesirov, J. P.; Zody, M. C.Lander, E. S. Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res. 13:91-6, 2003. ADDRESS: Whitehead Institute/MIT Center for Genome Research, Cambridge, Massachusetts 02141, USA. jaffe@genome.wi.mit.edu. Medline UID: 22417278 7. Kaderali, L.; Deshpande, A.; Nolan, J. P.White, P. S. Primer-design for multiplexed genotyping. Nucleic Acids Res. 31:1796-802, 2003. ADDRESS: ZAIK, University of Cologne, Weyertal 80, 50931 Cologne, Germany. kaderali@zpr.uni-koeln.de. Medline UID: 22514420 8. Olson, J. M. "Mixture models for linkage analysis of affected sibling pairs with covariates".23:444-8; author reply 449-55; discussion 456-7, 2002. Medline UID: 22318949 9. Park, Y. G.; Clifford, R.; Buetow, K. H.Hunter, K. W. Multiple cross and inbred strain haplotype mapping of complex-trait candidate genes. Genome Res. 13:118-21, 2003. ADDRESS: Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA. Medline UID: 22417282 10. Phillips, M. S.; Lawrence, R.; Sachidanandam, R.; Morris, A. P.; Balding, D. J.; Donaldson, M. A.; Studebaker, J. F.; Ankener, W. M.; Alfisi, S. V.; Kuo, F. S.; Camisa, A. L.; Pazorov, V.; Scott, K. E.; Carey, B. J.; Faith, J.; Katari, G.; Bhatti, H. A.; Cyr, J. M.; Derohannessian, V.; Elosua, C.; Forman, A. M.; Grecco, N. M.; Hock, C. R.; Kuebler, J. M.; Lathrop, J. A.; Mockler, M. A.; Nachtman, E. P.; Restine, S. L.; Varde, S. A.; Hozza, M. J.; Gelfand, C. A.; Broxholme, J.; Abecasis, G. R.; Boyce-Jacino, M. T.Cardon, L. R. Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat Genet. 33:382-7, 2003. ADDRESS: Orchid Biosciences Inc., 303A College Road East, Princeton, New Jersey 08540, USA. Medline UID: 22497786 11. Purcell, S. and Sham, P. Variance components models for gene-environment interaction in quantitative trait locus linkage analysis. Twin Res. 5:572-6, 2002. ADDRESS: Social, Genetic and Developmental Psychiatry Research Centre, Institute of Psychiatry, King's College, London, UK. s.purcell@iop.kcl.ac.uk. Medline UID: 22462848 12. Qin, Z. S.; Niu, T.Liu, J. S. Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms.71:1242-7, 2002. Medline UID: 22339329 13. Schadt, E. E.; Monks, S. A.; Drake, T. A.; Lusis, A. J.; Che, N.; Colinayo, V.; Ruff, T. G.; Milligan, S. B.; Lamb, J. R.; Cavet, G.; Linsley, P. S.; Mao, M.; Stoughton, R. B.Friend, S. H. Genetics of gene expression surveyed in maize, mouse and man. Nature. 422:297-302, 2003. ADDRESS: Rosetta Inpharmatics, LLC, 12040 115th Avenue N.E., Kirkland, Washington 98034, USA. eric_schadt@merck.com. Medline UID: 22533914 14. Schaid, D. J. Relative efficiency of ambiguous vs. directly measured haplotype frequencies. Genet Epidemiol. 23:426-43, 2002. ADDRESS: Departments of Health Sciences Research and Medical Genetics, Mayo Clinic/Foundation, Rochester, Minnesota 55905, USA. schaid@mayo.edu. Medline UID: 22318948 15. Sorensen, A. C.; Pong-Wong, R.; Windig, J. J.Woolliams, J. A. Precision of methods for calculating identity-by-descent matrices using multiple markers. Genet Sel Evol. 34:557-79, 2002. ADDRESS: Roslin Institute (Edinburgh), Roslin, Midlothian EH25 9PS, UK. AndersC.Sorenson@agrsci.dk. Medline UID: 22315012 16. Wang, K. and Huang, J. Score test for mapping quantitative-trait loci with sibships of arbitrary size when the dominance effect is not negligible. Genet Epidemiol. 23:398-412, 2002. ADDRESS: Division of Statistical Genetics, Department of Biostatistics, University of Iowa, Iowa City, Iowa 52242, USA. kai-wang@uiowa.edu. Medline UID: 22318946 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/