From crittend@itis.com Tue Jul 13 08:55:24 2004 Date: Mon, 12 Jul 2004 16:15:46 -0500 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: July, 2004 Genomics References Resent-Date: 12 Jul 2004 21:26:33 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 1069 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ These references can be downloaded to ProCite or Reference Manager from: www.genome.iastate.edu/ftp/ref JOURNAL REFS. (GENOMICS METHODS AND REVIEWS) NLM 7/04 1. Bellgard, M.; Gamble, T.; Reynolds, M.; Hunter, A.; Trifonov, E.Taplin, R. Gap mapping: a paradigm for aligning two sequences. Appl Bioinformatics. 2:S31-5, 2003. Medline UID: 15130814 2. Biswas, S. and Lin, S. Evaluations of maximization procedures for estimating linkage parameters under heterogeneity. Genet Epidemiol. 26:206-17, 2004. Medline UID: 15022207 3. Carvalho, B.; Ouwerkerk, E.; Meijer, G. A.Ylstra, B. High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides. J Clin Pathol. 57:644-6, 2004. Medline UID: 15166273 4. Ekstrom, C. T. Multipoint linkage analysis of quantitative traits on sex-chromosomes. Genet Epidemiol. 26:218-30, 2004. Medline UID: 15022208 5. Ellegren, H. Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 5:435-45, 2004. Medline UID: 15153996 6. Huang, S. Back to the biology in systems biology: what can we learn from biomolecular networks? Brief Funct Genomic Proteomic. 2:279-97, 2004. Medline UID: 15163364 7. Kamme, F.; Zhu, J.; Luo, L.; Yu, J.; Tran, D. T.; Meurers, B.; Bittner, A.; Westlund, K.; Carlton, S.Wan, J. Single-cell laser-capture microdissection and RNA amplification. Methods Mol Med. 99:215-23, 2004. Medline UID: 15131340 8. Kato, Y.; Tsunemi, M.; Miyagishi, M.; Kawasaki, H.Taira, K. Functional gene discovery using hybrid ribozyme libraries. Methods Mol Biol. 252:245-56, 2004. Medline UID: 15017054 9. Kauppi, L.; Jeffreys, A. J.Keeney, S. Where the crossovers are: recombination distributions in mammals. Nat Rev Genet. 5:413-24, 2004. Medline UID: 15153994 10. Khatkar, M. S.; Thomson, P. C.; Tammen, I.Raadsma, H. W. Quantitative trait loci mapping in dairy cattle: review and meta-analysis. Genet Sel Evol. 36:163-90, 2004. Medline UID: 15040897 11. Kumar, P.; Choithani, J.Gupta, K. C. Construction of oligonucleotide arrays on a glass surface using a heterobifunctional reagent, N-(2-trifluoroethanesulfonatoethyl)-N-(methyl)-triethoxysilylpropyl-3-amin e (NTMTA). Nucleic Acids Res. 32:e80, 2004. Medline UID: 15175428 12. Lee, S. H. and van der Werf, J. H. The efficiency of designs for fine-mapping of quantitative trait loci using combined linkage disequilibrium and linkage. Genet Sel Evol. 36:145-61, 2004. Medline UID: 15040896 13. McCallum, J. and Ganesh, S. Text mining of DNA sequence homology searches. Appl Bioinformatics. 2:S59-63, 2003. Medline UID: 15130818 14. Meuwissen, T. H. and Goddard, M. E. Bootstrapping of gene-expression data improves and controls the false discovery rate of differentially expressed genes. Genet Sel Evol. 36:191-205, 2004. Medline UID: 15040898 15. Peng, J. and Siegmund, D. Mapping quantitative traits with random and with ascertained sibships. Proc Natl Acad Sci U S A. 101:7845-50, 2004. Medline UID: 15084737 16. Schubeler, D.; MacAlpine, D. M.; Scalzo, D.; Wirbelauer, C.; Kooperberg, C.; van Leeuwen, F.; Gottschling, D. E.; O'Neill, L. P.; Turner, B. M.; Delrow, J.; Bell, S. P.Groudine, M. The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes Dev. 18:1263-71, 2004. Medline UID: 15175259 17. Switonski, M.; Szczerbal, I.Nowacka, J. The dog genome map and its use in mammalian comparative genomics. J Appl Genet. 45:195-214, 2004. Medline UID: 15131351 18. Williams, B. A.; Gwirtz, R. M.Wold, B. J. Genomic DNA as a cohybridization standard for mammalian microarray measurements. Nucleic Acids Res. 32:e81, 2004. Medline UID: 15190126 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o NAGRP BIOINFORMATICS COODINATION PROJECT - Sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/