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gnSourceQualifier Class Reference

gnSourceQualifier is used to store a sequence qualifier which resides in another source. More...

#include <gnSourceQualifier.h>

Inheritance diagram for gnSourceQualifier::

Public Methods
	gnSourceQualifier ()
	Empty constructor. More...
	gnSourceQualifier (gnBaseSource *source, string &name, uint32 begin, uint32 length)
	Constructor, records the location and name of the qualifier in the source. More...
	gnSourceQualifier (const gnSourceQualifier &s)
	Copy constructor. More...
	~gnSourceQualifier ()
	Destructor, frees memory. More...
gnSourceQualifier*	Clone () const
string	GetName () const
	Get the name of qualifier stored in this class. More...
string	GetValue () const
	Get the qualifier stored in this class. More...
uint32	GetNameLength () const
	Get the length of the qualifier name stored in this class. More...
uint32	GetValueLength () const
	Get the length of the qualifier stored in this class. More...
uint32	GetValueStart () const
	Get the qualifier's start position within the source. More...
pair<uint32, uint32>	GetValueLoc () const
	Get the qualifier's start position and length within the source. More...
void	SetValueStart (const uint32 start)
	Set the qualifier's start position within the source. More...
void	SetValueLength (const uint32 length)
	Get the qualifier's length within the source. More...
void	SetValueLoc (const pair< uint32, uint32 > startLen)
	Set the qualifier's start position and length within the source. More...
Private Attributes
string	m_name
uint32	m_start
uint32	m_length
gnBaseSource*	m_source

Detailed Description

gnSourceQualifier is used to store a sequence qualifier which resides in another source.

They are created by gnGBKSource and other sources and placed into a gnFeature.

Definition at line 31 of file gnSourceQualifier.h.

Constructor & Destructor Documentation

gnSourceQualifier::gnSourceQualifier ( )

Empty constructor.

Definition at line 19 of file gnSourceQualifier.cpp.
Referenced by Clone().

gnSourceQualifier::gnSourceQualifier ( gnBaseSource * source,

string & name,

uint32 begin,

uint32 length )

Constructor, records the location and name of the qualifier in the source.

Parameters:

source The source which contains the qualifier.

name The name of the qualifier.

begin The offset into the source where the qualifier starts.

length The length of the qualifier.

Definition at line 25 of file gnSourceQualifier.cpp.

gnSourceQualifier::gnSourceQualifier ( const gnSourceQualifier & s )

Copy constructor.

Parameters:

s The gnSourceQualifier to copy.

Definition at line 31 of file gnSourceQualifier.cpp.

gnSourceQualifier::~gnSourceQualifier ( )

Destructor, frees memory.

Definition at line 37 of file gnSourceQualifier.cpp.

Member Function Documentation

gnSourceQualifier * gnSourceQualifier::Clone ( ) const [inline, virtual]

Reimplemented from gnBaseQualifier.
Definition at line 98 of file gnSourceQualifier.h.

string gnSourceQualifier::GetName ( ) const [inline, virtual]

Get the name of qualifier stored in this class.

Returns:
The qualifier name as a string.

Reimplemented from gnBaseQualifier.
Definition at line 102 of file gnSourceQualifier.h.

uint32 gnSourceQualifier::GetNameLength ( ) const [inline, virtual]

Get the length of the qualifier name stored in this class.

Returns:
The length of the qualifier name.

Reimplemented from gnBaseQualifier.
Definition at line 106 of file gnSourceQualifier.h.

string gnSourceQualifier::GetValue ( ) const [virtual]

Get the qualifier stored in this class.

Returns:
The qualifier as a string.

Reimplemented from gnBaseQualifier.
Definition at line 39 of file gnSourceQualifier.cpp.

uint32 gnSourceQualifier::GetValueLength ( ) const [inline, virtual]

Get the length of the qualifier stored in this class.

Returns:
The length of the qualifier.

Reimplemented from gnBaseQualifier.
Definition at line 114 of file gnSourceQualifier.h.

pair< uint32, uint32 > gnSourceQualifier::GetValueLoc ( ) const [inline]

Get the qualifier's start position and length within the source.

Returns:
The qualifier start position and length as a pair.

Definition at line 118 of file gnSourceQualifier.h.

uint32 gnSourceQualifier::GetValueStart ( ) const [inline]

Get the qualifier's start position within the source.

Returns:
The qualifier start position.

Definition at line 110 of file gnSourceQualifier.h.

void gnSourceQualifier::SetValueLength ( const uint32 length ) [inline]

Get the qualifier's length within the source.

Parameters:

length The qualifier length.

Definition at line 129 of file gnSourceQualifier.h.

void gnSourceQualifier::SetValueLoc ( const pair< uint32, uint32 > startLen ) [inline]

Set the qualifier's start position and length within the source.

Parameters:

startLen The qualifier start position and length as a pair.

Definition at line 133 of file gnSourceQualifier.h.

void gnSourceQualifier::SetValueStart ( const uint32 start ) [inline]

Set the qualifier's start position within the source.

Parameters:

start The qualifier start position.

Definition at line 125 of file gnSourceQualifier.h.

Member Data Documentation

uint32 gnSourceQualifier::m_length [private]

Definition at line 93 of file gnSourceQualifier.h.

string gnSourceQualifier::m_name [private]

Definition at line 92 of file gnSourceQualifier.h.

gnBaseSource * gnSourceQualifier::m_source [private]

Definition at line 94 of file gnSourceQualifier.h.

uint32 gnSourceQualifier::m_start [private]

Definition at line 93 of file gnSourceQualifier.h.

The documentation for this class was generated from the following files:

Generated at Thu Apr 4 01:52:08 2002 for libGenome by

gnSourceQualifier Class Reference

Public Methods

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation