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coordMapper.cpp File Reference

#include "gn/gnSequence.h"
#include <iostream>
#include <fstream>
#include <algorithm>

Go to the source code of this file.

Compounds
struct	ExMem
Functions
boolean	LocationLessthan (const gnLocation &a, const gnLocation &b)
boolean	LocationEndLessthan (const gnLocation &a, const gnLocation &b)
boolean	LocationSizeLessthan (const gnLocation &a, const gnLocation &b)
boolean	ExMemLessthan (const ExMem &a, const ExMem &b)
void	print_usage (char *pname)
void	load_map_file (string &filename, vector< gnLocation > &loc_list)
void	map_coordinates (vector< gnLocation > &loc_list, vector< gnLocation > &map_list)
void	map_list_coordinates (list< gnLocation > &loc_list, list< gnLocation > &map_list)
void	print_feature (ostream &os, gnBaseFeature *cur_feat)
uint32	loc_binary_search (vector< gnLocation > &loc_list, uint32 startI, uint32 endI, gnLocation &query_loc)
int	main (int argc, char *argv[])

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Function Documentation

boolean ExMemLessthan ( const ExMem & a, const ExMem & b ) [static]

Definition at line 31 of file coordMapper.cpp.

boolean LocationEndLessthan ( const gnLocation & a, const gnLocation & b ) [static]

Definition at line 21 of file coordMapper.cpp.

boolean LocationLessthan ( const gnLocation & a, const gnLocation & b ) [static]

Definition at line 15 of file coordMapper.cpp.

boolean LocationSizeLessthan ( const gnLocation & a, const gnLocation & b ) [static]

Definition at line 27 of file coordMapper.cpp.

void load_map_file ( string & filename, vector< gnLocation > & loc_list )

Definition at line 45 of file coordMapper.cpp. Referenced by main().

uint32 loc_binary_search ( vector< gnLocation > & loc_list, uint32 startI, uint32 endI, gnLocation & query_loc )

Definition at line 93 of file coordMapper.cpp. Referenced by main().

int main ( int argc, char * argv[] )

Definition at line 106 of file coordMapper.cpp.

void map_coordinates ( vector< gnLocation > & loc_list, vector< gnLocation > & map_list )

Definition at line 64 of file coordMapper.cpp. Referenced by main().

void map_list_coordinates ( list< gnLocation > & loc_list, list< gnLocation > & map_list )

Definition at line 74 of file coordMapper.cpp.

void print_feature ( ostream & os, gnBaseFeature * cur_feat )

Definition at line 85 of file coordMapper.cpp. Referenced by main().

void print_usage ( char * pname )

Definition at line 41 of file coordMapper.cpp.

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