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gnBaseFilter.h

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// File:            gnBaseFilter.h
// Purpose:         Generic filter interface
// Description:     Filters sequences, translates, reverse complement, converts
//                   additions, etc.
// Changes:        
// Version:         libGenome 0.1.0 
// Author:          Aaron Darling 
// Last Edited:     April 15, 2001, 10:34:50pm 
// Modified by:     
// Copyright:       (c) Aaron Darling 
// Licenses:        Proprietary 
#ifndef _gnBaseFilter_h_
#define _gnBaseFilter_h_

#include "gn/gnDefs.h"

#include <string>
#include "gn/gnClone.h"
#include "gn/gnDefs.h"

class GNDLLEXPORT gnBaseFilter : public gnClone
{
public:         
        virtual gnBaseFilter* Clone() const = 0;
        
        virtual string GetName() const;
        virtual void SetName( string name );
        
        virtual gnSeqC Filter( const gnSeqC ch ) const = 0;

        virtual void Filter( gnSeqC** seq, uint32& len ) const = 0;

        virtual void Filter( string &seq ) const = 0;

protected:
        string m_name;

};//class gnBaseFilter

inline
string gnBaseFilter::GetName() const
{
        return m_name;
}
inline
void gnBaseFilter::SetName( string name )
{
        m_name = name;
}

#endif
        // _gnBaseFilter_h_

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