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gnBaseFilter Class Reference

#include <gnBaseFilter.h>

Inheritance diagram for gnBaseFilter::

List of all members.

Public Methods
virtual gnBaseFilter*	Clone () const=0
virtual string	GetName () const
	Gets the name of this filter. More...
virtual void	SetName (string name)
	Sets the name of this filter. More...
virtual gnSeqC	Filter (const gnSeqC ch) const=0
	Filter the given character. More...
virtual void	Filter (gnSeqC **seq, uint32 &len) const=0
	Filter the given character array. More...
virtual void	Filter (string &seq) const=0
	Filters the given string. More...
Protected Attributes
string	m_name

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Member Function Documentation

gnBaseFilter * gnBaseFilter::Clone ( ) const [pure virtual]

Reimplemented from gnClone. Reimplemented in gnFastTranslator, gnFilter, gnPosSpecificTranslator, and gnTranslator.

void gnBaseFilter::Filter ( string & seq ) const [pure virtual]

Filters the given string. Parameters: seq   The string to filter Reimplemented in gnFastTranslator, gnFilter, gnPosSpecificTranslator, and gnTranslator.

void gnBaseFilter::Filter ( gnSeqC ** seq, uint32 & len ) const [pure virtual]

Filter the given character array. Parameters: seq   A pointer to the character array len   the length of the character array to filter Returns: The filtered character Reimplemented in gnFastTranslator, gnFilter, gnPosSpecificTranslator, and gnTranslator.

gnSeqC gnBaseFilter::Filter ( const gnSeqC ch ) const [pure virtual]

Filter the given character. Parameters: ch   The character to filter Returns: The filtered character Reimplemented in gnFastTranslator, gnFilter, gnPosSpecificTranslator, and gnTranslator. Referenced by gnPosSpecificTranslator::Filter().

string gnBaseFilter::GetName ( ) const [inline, virtual]

Gets the name of this filter. Returns: the filter name Definition at line 66 of file gnBaseFilter.h.

void gnBaseFilter::SetName ( string name ) [inline, virtual]

Sets the name of this filter. Parameters: name   the new filter name Definition at line 71 of file gnBaseFilter.h. Referenced by gnFilter::CreateAlphabetCharacterFilter(), gnFilter::CreateBasicDNAFilter(), gnFilter::CreateBasicRNAFilter(), gnFilter::CreateDNAComplementFilter(), gnTranslator::CreateDNAProteinTranslator(), gnFilter::CreateDNAtoRNAFilter(), gnFilter::CreateFullDNAFilter(), gnFilter::CreateFullRNAFilter(), gnFilter::CreateNumberCharacterFilter(), gnTranslator::CreateProteinDNATranslator(), gnFilter::CreateProteinFilter(), gnTranslator::CreateProteinRNATranslator(), gnFilter::CreateRNAComplementFilter(), gnTranslator::CreateRNAProteinTranslator(), and gnFilter::CreateRNAtoDNAFilter().

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Member Data Documentation

string gnBaseFilter::m_name [protected]

Definition at line 61 of file gnBaseFilter.h.

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The documentation for this class was generated from the following file:

• gnBaseFilter.h

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