---

gnPosSpecificTranslator Class Reference

Used to translate sequences differently based on the position of input characters. More...

#include <gnPosSpecificTranslator.h>

Inheritance diagram for gnPosSpecificTranslator::

List of all members.

Public Types
enum	gnTranslatorType { ProteinDNATranslatorType, DNAProteinTranslatorType }
Public Methods
	gnPosSpecificTranslator ()
	gnPosSpecificTranslator (gnTranslatorType t_type)
	gnPosSpecificTranslator (const gnPosSpecificTranslator &sf)
gnPosSpecificTranslator&	operator= (const gnPosSpecificTranslator &sf)
gnPosSpecificTranslator*	Clone () const
virtual gnSeqC	Filter (const gnSeqC ch) const
	Filter the given character. More...
virtual void	Filter (gnSeqC **seq, uint32 &len) const
	Filter the given character array. More...
virtual void	Filter (string &seq) const
	Filters the given string. More...
Static Public Methods
const gnPosSpecificTranslator*	ProteinDNATranslator ()
const gnPosSpecificTranslator*	DNAProteinTranslator ()
Private Methods
void	CreateProteinDNATranslator ()
void	CreateDNAProteinTranslator ()
Private Attributes
gnTranslatorType	m_type
const gnBaseFilter*	filter

---

Detailed Description

Used to translate sequences differently based on the position of input characters.

Useful for tranlating genes because the first codon is translated differently.

Definition at line 33 of file gnPosSpecificTranslator.h.

---

Member Enumeration Documentation

enum gnPosSpecificTranslator::gnTranslatorType

Enumeration values: ProteinDNATranslatorType   DNAProteinTranslatorType   Definition at line 40 of file gnPosSpecificTranslator.h.

---

Constructor & Destructor Documentation

gnPosSpecificTranslator::gnPosSpecificTranslator ( )

Definition at line 29 of file gnPosSpecificTranslator.cpp. Referenced by Clone(), DNAProteinTranslator(), and ProteinDNATranslator().

gnPosSpecificTranslator::gnPosSpecificTranslator ( gnTranslatorType t_type )

Definition at line 37 of file gnPosSpecificTranslator.cpp.

gnPosSpecificTranslator::gnPosSpecificTranslator ( const gnPosSpecificTranslator & sf )

Definition at line 33 of file gnPosSpecificTranslator.cpp.

---

Member Function Documentation

gnPosSpecificTranslator * gnPosSpecificTranslator::Clone ( ) const [inline, virtual]

Reimplemented from gnBaseFilter. Definition at line 68 of file gnPosSpecificTranslator.h.

void gnPosSpecificTranslator::CreateDNAProteinTranslator ( ) [private]

void gnPosSpecificTranslator::CreateProteinDNATranslator ( ) [private]

const gnPosSpecificTranslator * gnPosSpecificTranslator::DNAProteinTranslator ( ) [static]

Definition at line 23 of file gnPosSpecificTranslator.cpp.

void gnPosSpecificTranslator::Filter ( string & seq ) const [virtual]

Filters the given string. Parameters: seq   The string to filter Reimplemented from gnBaseFilter. Definition at line 60 of file gnPosSpecificTranslator.cpp.

void gnPosSpecificTranslator::Filter ( gnSeqC ** seq, uint32 & len ) const [virtual]

Filter the given character array. Parameters: seq   A pointer to the character array len   the length of the character array to filter Returns: The filtered character Reimplemented from gnBaseFilter. Definition at line 56 of file gnPosSpecificTranslator.cpp.

gnSeqC gnPosSpecificTranslator::Filter ( const gnSeqC ch ) const [virtual]

Filter the given character. Parameters: ch   The character to filter Returns: The filtered character Reimplemented from gnBaseFilter. Definition at line 52 of file gnPosSpecificTranslator.cpp.

const gnPosSpecificTranslator * gnPosSpecificTranslator::ProteinDNATranslator ( ) [static]

Definition at line 19 of file gnPosSpecificTranslator.cpp.

gnPosSpecificTranslator & gnPosSpecificTranslator::operator= ( const gnPosSpecificTranslator & sf )

---

Member Data Documentation

const gnBaseFilter * gnPosSpecificTranslator::filter [private]

Definition at line 61 of file gnPosSpecificTranslator.h.

gnTranslatorType gnPosSpecificTranslator::m_type [private]

Definition at line 60 of file gnPosSpecificTranslator.h.

---

The documentation for this class was generated from the following files:

• gnPosSpecificTranslator.h
• gnPosSpecificTranslator.cpp

---