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libGenome Compound List

Here are the classes, structs, unions and interfaces with brief descriptions:

• ExMem
• gnABISource (GnABISource is not implemented)
• gnBaseFeature (Features of DNA sequences can be accessed and manipulated using classes derived from gnBaseFeature)
• gnBaseFilter
• gnBaseHeader (This class provides a general interface to sequence related headers)
• gnBaseQualifier (GnBaseQualifier is a general interface to sequence qualifiers)
• gnBaseSource (GnBaseSource defines a standard interface for derived classes to provide access to file, database, and network sources of genetic data)
• gnBaseSpec (GnBaseSpec is the class which stores genetic information and is best accessed using gnSequence)
• gnClone
• gnCompare
• gnContigSpec (GnContigSpec is an interface for classes which store contigs, or reads, of DNA or protein sequence)
• gnDataBaseSource (Not yet implemented)
• gnDNASequence (GnDNASequence is a special kind of gnSequence which can be used for DNA sequences It sets the default filters and comparators to the DNA filters and comparators)
• gnDNXSource (GnDNXSource implements the DNX file source)
• gnException
• gnExceptionCode
• gnFASSource (GnFASSource reads and writes FastA files)
• gnFastTranslator
• gnFeature (GnFeature stores sequence features in memory)
• gnFileContig (GnFileContig is used by source classes to track the location of sequence data on disk)
• gnFileSource (GnFileSource is a standard interface to all file based sources of genetic information)
• gnFilter
• gnFragmentSpec (GnFragmentSpec contains a list of specs which make up a sequence fragment)
• gnGBKSource (GnGBKSource is a GenBank sequence file reader)
• gnGenomeSpec (This class contains references to the sequence data, annotation, and other related header data for an organism's genome)
• gnLocation (This class is used to store sequence locations)
• gnMultiSpec (This class defines an interface for specs which have multiple subspecs containing sequence data)
• gnPosSpecificTranslator (Used to translate sequences differently based on the position of input characters)
• gnProteinSequence (GnProteinSequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators)
• gnRAWSource (GnRAWSource reads raw sequence data from a text file)
• gnRNASequence (GnRNASequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators)
• gnSEQSource (GnSEQSource is a SEQ file reader)
• gnSequence (GnSequence is the most commonly used class in libGenome)
• gnSourceFactory (GnSourceFactory is the middle man when acessing a sequence data source It tracks all data sources currently in use, ensuring that a particular data source is only opened and parsed once)
• gnSourceHeader (GnSourceHeader is used to store a sequence header which resides in another source)
• gnSourceQualifier (GnSourceQualifier is used to store a sequence qualifier which resides in another source)
• gnSourceSpec (GnSourceSpec stores sequence and annotation data from another source)
• gnStringHeader (GnStringHeader stores sequence related header information in memory)
• gnStringQualifier (GnStringQualifier stores a sequence qualifier in memory)
• gnStringSpec (GnStringSpec stores a sequence and annotation data in memory)
• gnTranslator (Facilitates the translation of ambiguous DNA and RNA sequences to protein sequence)

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