|
|
Definition at line 37 of file gnDefs.h.
Referenced by gnCompare::AddArrayEntry(), gnSequence::addFeature(), gnGenomeSpec::AddFeature(), gnFragmentSpec::AddFeature(), gnMultiSpec::AddHeader(), gnGenomeSpec::AddSpec(), gnFragmentSpec::AddSpec(), BaseCount(), gnSEQSource::BaseCount(), gnMultiSpec::Clear(), gnGenomeSpec::Clear(), gnFragmentSpec::Clear(), gnFileContig::Clear(), gnGenomeSpec::CloneRange(), gnFragmentSpec::CloneRange(), gnCompare::Contains(), gnBaseFeature::Contains(), gnSequence::contigByName(), gnSequence::contigIndexByBase(), gnSequence::contigIndexByName(), gnMultiSpec::CropEnd(), gnFragmentSpec::CropEnd(), gnBaseFeature::CropEnd(), gnMultiSpec::CropStart(), gnFragmentSpec::CropStart(), gnBaseFeature::CropStart(), gnCompare::DelArrayEntry(), gnSequence::erase(), gnTranslator::Filter(), gnFilter::Filter(), gnFastTranslator::Filter(), gnBaseFeature::FirstIndexOfQualifier(), gnSEQSource::FormatString(), gnGBKSource::FormatString(), gnGenomeSpec::GetBrokenFeatures(), gnFragmentSpec::GetBrokenFeatures(), gnGenomeSpec::GetContainedFeatures(), gnFragmentSpec::GetContainedFeatures(), gnSEQSource::GetContigID(), gnRAWSource::GetContigID(), gnGBKSource::GetContigID(), gnFASSource::GetContigID(), gnDNXSource::GetContigID(), gnABISource::GetContigID(), gnSEQSource::GetContigListLength(), gnRAWSource::GetContigListLength(), gnGBKSource::GetContigListLength(), gnFASSource::GetContigListLength(), gnDNXSource::GetContigListLength(), gnABISource::GetContigListLength(), gnFASSource::GetContigSeqLength(), gnTranslator::GetDefaultInputWidth(), gnGenomeSpec::GetFeature(), gnSequence::getFeatureListLength(), gnGenomeSpec::GetFeatureListLength(), gnFragmentSpec::GetFeatureListLength(), gnSequence::getHeaderListLength(), gnMultiSpec::GetHeaderListLength(), gnSourceHeader::GetHeaderStart(), gnBaseFeature::GetID(), gnExceptionCode::GetInt(), gnGenomeSpec::GetIntersectingFeatures(), gnFragmentSpec::GetIntersectingFeatures(), gnStringHeader::GetLength(), gnSourceHeader::GetLength(), gnMultiSpec::GetLength(), gnBaseFeature::GetLocationListLength(), gnStringQualifier::GetNameLength(), gnSourceQualifier::GetNameLength(), GetNewExceptionCode(), gnSourceFactory::GetPathListSize(), gnBaseFeature::GetQualifierListLength(), gnSourceFactory::GetSourceClassListSize(), gnContigSpec::GetSourceContigIndex(), gnSourceFactory::GetSourceListSize(), gnFASSource::GetSpec(), gnMultiSpec::GetSpecEndBase(), gnMultiSpec::GetSpecIndexByBase(), gnMultiSpec::GetSpecIndexByName(), gnGenomeSpec::GetSpecListLength(), gnFragmentSpec::GetSpecListLength(), gnMultiSpec::GetSpecStartBase(), gnSourceFactory::GetURL(), gnStringQualifier::GetValueLength(), gnSourceQualifier::GetValueLength(), gnSourceQualifier::GetValueStart(), gnFeature::gnFeature(), gnFileContig::gnFileContig(), gnFragmentSpec::gnFragmentSpec(), gnGenomeSpec::gnGenomeSpec(), gnSEQSource::HasContig(), gnGBKSource::HasContig(), gnFASSource::HasContig(), gnDNXSource::HasContig(), gnSourceFactory::HasPath(), gnBaseFeature::HasQualifier(), gnSequence::insert(), gnBaseFeature::Intersects(), gnBaseFeature::IsContainedBy(), gnFilter::IsValid(), gnBaseFeature::LastIndexOfQualifier(), gnCompare::LessThan(), gnFilter::MakeValid(), gnGenomeSpec::MergeFragments(), gnBaseFeature::MoveNegative(), gnBaseFeature::MovePositive(), gnSEQSource::ParseStream(), gnRAWSource::ParseStream(), gnGBKSource::ParseStream(), gnFASSource::ParseStream(), gnDNXSource::ParseStream(), gnGenomeSpec::RemoveFeature(), gnTranslator::RemovePair(), gnFilter::ReverseFilter(), gnSEQSource::SeqRead(), gnMultiSpec::SeqRead(), gnGBKSource::SeqRead(), gnFASSource::SeqRead(), gnSEQSource::SeqStartPos(), gnGBKSource::SeqStartPos(), gnFASSource::SeqStartPos(), gnGenomeSpec::SetReverseComplement(), gnFragmentSpec::SetReverseComplement(), gnGBKSource::Write(), gnFASSource::Write(), gnDNXSource::Write(), gnGBKSource::WriteHeader(), and gnBaseFeature::~gnBaseFeature(). |
