generate.cc File Reference

This file contains the program to generate sequences from a Hidden Markov Model. More...

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Functions
success_t	generate_discrete ()
success_t	generate_gaussian ()
success_t	generate_mixture ()
int	main (int argc, char *argv[])
void	usage ()
Variables
const fx_module_doc	hmm_generate_main_doc
const fx_entry_doc	hmm_generate_main_entries []
const fx_submodule_doc	hmm_generate_main_submodules []

---

Detailed Description

This file contains the program to generate sequences from a Hidden Markov Model.

Usage: generate --type=TYPE --profile=PROFILE [OPTIONS] See the usage() function for complete option list

Definition in file generate.cc.

---

Variable Documentation

const fx_module_doc hmm_generate_main_doc

Initial value:

 {
  hmm_generate_main_entries, hmm_generate_main_submodules,
  "This is a program generating sequences from HMM models.\n"
}

Definition at line 79 of file generate.cc.

const fx_entry_doc hmm_generate_main_entries[]

Initial value:

 {
  {"type", FX_REQUIRED, FX_STR, NULL,
   "  HMM type : discrete | gaussian | mixture.\n"},
  {"profile", FX_REQUIRED, FX_STR, NULL,
   "  A file containing HMM profile.\n"},
  {"length", FX_PARAM, FX_INT, NULL,
   "  Sequence length, default = 10.\n"},
  {"lenmax", FX_PARAM, FX_INT, NULL,
   "  Maximum sequence length, default = length\n"},
  {"numseq", FX_PARAM, FX_INT, NULL,
   "  Number of sequance, default = 10.\n"},
  {"seqfile", FX_PARAM, FX_STR, NULL,
   "  Output file for the generated sequences.\n"},
  {"statefile", FX_PARAM, FX_STR, NULL,
   "  Output file for the generated state sequences.\n"},
  FX_ENTRY_DOC_DONE
}

Definition at line 57 of file generate.cc.

const fx_submodule_doc hmm_generate_main_submodules[]

Initial value:

 {
  FX_SUBMODULE_DOC_DONE
}

Definition at line 75 of file generate.cc.