loglik.cc File Reference

This file contains the program to compute log-likelihood of sequences according to a Hidden Markov Model. More...

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Functions
success_t	loglik_discrete ()
success_t	loglik_gaussian ()
success_t	loglik_mixture ()
int	main (int argc, char *argv[])
void	usage ()
Variables
const fx_module_doc	hmm_loglik_main_doc
const fx_entry_doc	hmm_loglik_main_entries []
const fx_submodule_doc	hmm_loglik_main_submodules []

---

Detailed Description

This file contains the program to compute log-likelihood of sequences according to a Hidden Markov Model.

Usage: loglik --type=TYPE --profile=PROFILE [OPTIONS] See the usage() function for complete option list

Definition in file loglik.cc.

---

Variable Documentation

const fx_module_doc hmm_loglik_main_doc

Initial value:

 {
  hmm_loglik_main_entries, hmm_loglik_main_submodules,
  "This is a program computing log-likelihood of data sequences \n"
  "from HMM models.\n"
}

Definition at line 73 of file loglik.cc.

const fx_entry_doc hmm_loglik_main_entries[]

Initial value:

 {
  {"type", FX_REQUIRED, FX_STR, NULL,
   "  HMM type : discrete | gaussian | mixture.\n"},
  {"profile", FX_REQUIRED, FX_STR, NULL,
   "  A file containing HMM profile.\n"},
  {"seqfile", FX_PARAM, FX_STR, NULL,
   "  Output file for the data sequences.\n"},
  {"logfile", FX_PARAM, FX_STR, NULL,
   "  Output file for the computed log-likelihood of the sequences.\n"},
  FX_ENTRY_DOC_DONE
}

Definition at line 57 of file loglik.cc.

const fx_submodule_doc hmm_loglik_main_submodules[]

Initial value:

 {
  FX_SUBMODULE_DOC_DONE
}

Definition at line 69 of file loglik.cc.