viterbi.cc File Reference

This file contains the program to compute the most probable state sequences in a Hidden Markov Model of given sequences Model. More...

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Functions
int	main (int argc, char *argv[])
void	usage ()
success_t	viterbi_discrete ()
success_t	viterbi_gaussian ()
success_t	viterbi_mixture ()
Variables
const fx_module_doc	hmm_viterbi_main_doc
const fx_entry_doc	hmm_viterbi_main_entries []
const fx_submodule_doc	hmm_viterbi_main_submodules []

---

Detailed Description

This file contains the program to compute the most probable state sequences in a Hidden Markov Model of given sequences Model.

Usage: viterbi --type=TYPE --profile=PROFILE --seqfile=FILE [OPTIONS] See the usage() function for complete option list

Definition in file viterbi.cc.

---

Variable Documentation

const fx_module_doc hmm_viterbi_main_doc

Initial value:

 {
  hmm_viterbi_main_entries, hmm_viterbi_main_submodules,
  "This is a program computing the most probable state sequences \n"
  "of data sequences from HMM models.\n"
}

Definition at line 74 of file viterbi.cc.

const fx_entry_doc hmm_viterbi_main_entries[]

Initial value:

 {
  {"type", FX_REQUIRED, FX_STR, NULL,
   "  HMM type : discrete | gaussian | mixture.\n"},
  {"profile", FX_REQUIRED, FX_STR, NULL,
   "  A file containing HMM profile.\n"},
  {"seqfile", FX_PARAM, FX_STR, NULL,
   "  Output file for the data sequences.\n"},
  {"statefile", FX_PARAM, FX_STR, NULL,
   "  Output file for the most probable state sequences.\n"},
  FX_ENTRY_DOC_DONE
}

Definition at line 58 of file viterbi.cc.

const fx_submodule_doc hmm_viterbi_main_submodules[]

Initial value:

 {
  FX_SUBMODULE_DOC_DONE
}

Definition at line 70 of file viterbi.cc.