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gnExceptionCode.h File Reference

#include "gn/gnDefs.h"
#include <string>

Go to the source code of this file.

Compounds
class	gnExceptionCode
Defines
#define	CREATE_EXCEPTION(E_NAME)
Functions
GNDLLEXPORT uint32&	GetNewExceptionCode ()
gnExceptionCode&	IndexOutOfBounds ()
	Thrown when a generic array index is too large or otherwise invalid. More...
gnExceptionCode&	SeqIndexOutOfBounds ()
	Thrown when a sequence index references an invalid coordinate. More...
gnExceptionCode&	FragmentIndexOutOfBounds ()
	Thrown when a fragment index references an invalid fragment. More...
gnExceptionCode&	ContigIndexOutOfBounds ()
	Thrown when a contig index references an invalid contig. More...
gnExceptionCode&	HeaderIndexOutOfBounds ()
	Thrown when a header index references an invalid header. More...
gnExceptionCode&	SpecIndexOutOfBounds ()
	Thrown when a spec index references an invalid spec. More...
gnExceptionCode&	FeatureIndexOutOfBounds ()
	Thrown when a feature index references an invalid feature. More...
gnExceptionCode&	FileNotOpened ()
	Thrown when a file can't be opened. More...
gnExceptionCode&	URLNotFound ()
	Thrown when a URL can't be opened. More...
gnExceptionCode&	FileUnreadable ()
	Thrown when a file's data is corrupt or unreadable. More...
gnExceptionCode&	IOStreamFailed ()
	Thrown when an operation on a stream fails. More...
gnExceptionCode&	NullPointer ()
	Thrown when an invalid pointer is given. More...

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Define Documentation

#define CREATE_EXCEPTION( E_NAME )

Value: inline \ static gnExceptionCode& E_NAME(){ \ static gnExceptionCode* m_excp = new gnExceptionCode(GetNewExceptionCode(), #E_NAME); \ return *m_excp; \ } Definition at line 54 of file gnExceptionCode.h.

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Function Documentation

gnExceptionCode & ContigIndexOutOfBounds ( ) [inline, static]

Thrown when a contig index references an invalid contig. Definition at line 79 of file gnExceptionCode.h. Referenced by gnFragmentSpec::GetSpec(), and gnFragmentSpec::RemoveSpec().

gnExceptionCode & FeatureIndexOutOfBounds ( ) [inline, static]

Thrown when a feature index references an invalid feature. Definition at line 91 of file gnExceptionCode.h. Referenced by gnGenomeSpec::GetFeature(), gnGenomeSpec::RemoveFeature(), and gnFragmentSpec::RemoveFeature().

gnExceptionCode & FileNotOpened ( ) [inline, static]

Thrown when a file can't be opened. Definition at line 95 of file gnExceptionCode.h. Referenced by gnSourceFactory::AddSource(), gnFileSource::Open(), and gnFASSource::Write().

gnExceptionCode & FileUnreadable ( ) [inline, static]

Thrown when a file's data is corrupt or unreadable. Definition at line 103 of file gnExceptionCode.h.

gnExceptionCode & FragmentIndexOutOfBounds ( ) [inline, static]

Thrown when a fragment index references an invalid fragment. Definition at line 75 of file gnExceptionCode.h. Referenced by gnGenomeSpec::GetSpec(), and gnGenomeSpec::MergeFragments().

uint32 & GetNewExceptionCode ( ) [inline]

Definition at line 42 of file gnExceptionCode.h.

gnExceptionCode & HeaderIndexOutOfBounds ( ) [inline, static]

Thrown when a header index references an invalid header. Definition at line 83 of file gnExceptionCode.h. Referenced by gnMultiSpec::GetHeader(), and gnMultiSpec::RemoveHeader().

gnExceptionCode & IOStreamFailed ( ) [inline, static]

Thrown when an operation on a stream fails. Definition at line 107 of file gnExceptionCode.h. Referenced by gnFileSource::Close().

gnExceptionCode & IndexOutOfBounds ( ) [inline, static]

Thrown when a generic array index is too large or otherwise invalid. Definition at line 67 of file gnExceptionCode.h. Referenced by gnSourceFactory::DelSource().

gnExceptionCode & NullPointer ( ) [inline, static]

Thrown when an invalid pointer is given. Definition at line 111 of file gnExceptionCode.h. Referenced by gnFileSource::SetFilter().

gnExceptionCode & SeqIndexOutOfBounds ( ) [inline, static]

Thrown when a sequence index references an invalid coordinate. Definition at line 71 of file gnExceptionCode.h. Referenced by gnGenomeSpec::AddFeature(), gnMultiSpec::GetSpecIndexByBase(), gnMultiSpec::SeqRead(), gnSequence::erase(), gnSequence::insert(), gnSequence::localToGlobal(), gnSequence::splitContig(), and gnSequence::subseq().

gnExceptionCode & SpecIndexOutOfBounds ( ) [inline, static]

Thrown when a spec index references an invalid spec. Definition at line 87 of file gnExceptionCode.h. Referenced by gnMultiSpec::GetSpecEndBase(), gnMultiSpec::GetSpecIndexByName(), gnMultiSpec::GetSpecStartBase(), and gnMultiSpec::SeqRead().

gnExceptionCode & URLNotFound ( ) [inline, static]

Thrown when a URL can't be opened. Definition at line 99 of file gnExceptionCode.h.

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