Publications

M.A. White, C. Ané, C. Dewey, B. Larget, D.A. Baum, B. Payseur. Fine scale phylogenetic discordance across the house mouse genome. PloS Genetics, in press.

S.D. Smith, C. Ané, D.A. Baum (2009). Macroevolutionary tests of pollination syndromes: A reply to Fenster et al. Evolution. 63(10):2763-2767.

F. Rodriguez, F. Wu, C. Ané, S. Tanksley, D.M. Spooner (2009). Do potatoes and potatoes have a single evolutionary history, and what proportion of the genome supports this history? BMC Evolutionary Biology 9:191.

D.L. Borneman, S.C. Ingham, C. Ané (2009). Mathematical approaches to estimating lag-phase duration and growth rate for predicting growth of Salmonella serovars, Escherichia coli O157:H7, and Staphylococcus aureus in raw beef, bratwurst, and poultry. Journal of Food Protection 72(6):1190-1200.

D.L. Borneman, S.C. Ingham, C. Ané (2009). Predicting growth-no growth of Staphylococcus aureus on vacuum-packaged ready-to-eat meats. Journal of Food Protection 72(3):539-548.

C. Ané (2008). Analysis of comparative data with hierarchical autocorrelation. Annals of Applied Statistics 2(3):1078-1102. arXiv

S. Martin, E.L. Epperson,J. Rose,C. Kurtz, C. Ané, H. Carey (2008). Proteomic analysis of the winter-protected phenotype of hibernating ground squirrel intestine. AJP- Regulatory, Integrative and Comparative Physiology, 295:316-328.

J.P. Huelsenbeck, C. Ané, B. Larget and F. Ronquist (2008). A Bayesian perspective on a non-parsimonious parsimony model. Systematic Biology, 57(3):406-419.

S.D. Smith, C. Ané and D.A. Baum (2008). The role of pollinator shifts in the floral diversification of Iochroma (Solanaceae). Evolution 62(4):793-806.

E.S. Allman, C. Ané, J.A. Rhodes (2008). Identifiability of a Markovian model of molecular evolution with Gamma-distributed rates. Advances in Applied Probability 40(1), 229-249. Abstract or preprint.

C. Ané, O. Eulenstein, R. Piaggio-Talice and M.J. Sanderson (2009). Groves of phylogenetic trees. Annals of Combinatorics 13(2):139-167. Technical report available here (2006).

M.J. Sanderson, C. Ané, O. Eulenstein, D. Fernández-Baca, J. Kim, M.M. McMahon, R. Piaggio-Talice (2007). Fragmentation of large data sets in phylogenetic analyses. Chapter 7 (p. 199-216) in Reconstructing Evolution: New Mathematical and Computational Advances. Olivier Gascuel and Mike Steel, editors. Oxford University Press.

C. Ané, B. Larget, D.A. Baum, S.D. Smith, A. Rokas (2007). Bayesian estimation of concordance among gene trees. Molecular Biology and Evolution 24(2), 412-426. Abstract and Erratum. Software available here and manual here.

B.C. O'Meara, C. Ané, M.J. Sanderson, P.C. Wainwright (2006). Testing for different rates of continuous trait evolution using likelihood. Evolution 60(5), 922-933.

C. Ané, J.G. Burleigh, M.M. McMahon, M.J. Sanderson (2005). Covarion structure in plastid genome evolution: A new statistical test. Molecular Biology and Evolution 22(4), 914-924. Abstract, full text and supplemental data.

C. Ané and M.J. Sanderson (2005). Missing the forest for the trees: phylogenetic compression and its implication for inferring complex evolutionary histories. Systematic Biology, 54(1), 146-157. and supplemental data

C. Ané, O. Eulenstein, and R. Piaggio-Talice (2005). Phylogenetic compression and model selection: an improved encoding scheme. Technical report here.

A.C. Driskell, C. Ané, J.G. Burleigh, M.M. McMahon, B.C. O'Meara, M.J. Sanderson (2004). Prospects for building the tree of life from large sequence databases. Science, 306(5699), 1172-1174.

D. Concordet, F. Léger, C. Ané (2004). Population PK/PD Analysis. In Encyclopedia of Biopharmaceutical Statistics, 2nd Ed.; S. Chow, Ed.; Marcel Dekker, Inc.: New York.

C. Ané and D. Concordet (2003). Population pharmacokinetics - pharmacodynamics relationships of an anticancer drug. Statistics in Medicine 22(6), 833-846.

C. Ané and D. Chafai (2000). Entropy inequalities in information theory (in french). Chapter 10 of the book Sur les ingalités de Sobolev logarithmiques, Panoramas et Syntheses no 10, SMF. Mathematical Review report. More here.

C. Ané (2001). Clark-Ocone formulas and Poincaré inequalities on the discrete cube. Annales de l'Institut Henri Poincaré, Probab. Statist. 37(1), 101-137.

C. Ané and M. Ledoux (2000). On logarithmic Sobolev inequalities for continuous time random walks on graphs Probability Theory and Related Fields, 116(4), 573-602.

C. Ané (1997). Large deviations in small time for a Markov process with countable state space (in french). C. R. Acad. Sc. Paris, I 325, 1025-1028.